| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,258,519 – 19,258,630 |
| Length | 111 |
| Max. P | 0.775048 |
| Location | 19,258,519 – 19,258,630 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -32.37 |
| Energy contribution | -32.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19258519 111 + 20766785 CUUCGCCCACUUCCUCCACCUCAUCGACGACUGCCACAACCACGGCCCCCUCCACGUCCAGCGACA---------CGUCCUCCUCCUCCACGAGCUCCGACAGCGAGGAGGUGGACAGGC ....(.((((((((((.........((((...(((........))).........(((....))).---------))))..............(((.....))))))))))))).).... ( -30.90) >DroSec_CAF1 48841 120 + 1 CUUCGCCCACUUCCUCCACCUCUUCGACGACUGCCACAACCAAGGCGCCCUCCACGUCCAGCGACAACACCACUGAGUCCUCUUCCUCCUCGAGCUCCGACAGCGAGGAGGUGGACAGGC ....(((.......(((((((((((((.(((((((........))).........(((....)))..........)))).))...........(((.....))))))))))))))..))) ( -35.30) >DroSim_CAF1 48324 120 + 1 CUUCGCCCACUUCCUCCACCUCUUCGACGACUGCCACAACCAAGGCGCCCUCCACGUCCAGCGACAACACCACUGAGUCCUCUUCCUCCUCGAGCUCCGACAGCGAGGAGGUGGACAGGC ....(((.......(((((((((((((.(((((((........))).........(((....)))..........)))).))...........(((.....))))))))))))))..))) ( -35.30) >consensus CUUCGCCCACUUCCUCCACCUCUUCGACGACUGCCACAACCAAGGCGCCCUCCACGUCCAGCGACAACACCACUGAGUCCUCUUCCUCCUCGAGCUCCGACAGCGAGGAGGUGGACAGGC ....(((.......(((((((((((((.(((.(((........))).........(((....)))...........))).))...........(((.....))))))))))))))..))) (-32.37 = -32.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:22 2006