Locus 6121

Sequence ID 2R_DroMel_CAF1
Location 19,254,429 – 19,254,549
Length 120
Max. P 0.830460
window9803

overview

Window 3

Location 19,254,429 – 19,254,549
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.92
Mean single sequence MFE -51.40
Consensus MFE -41.83
Energy contribution -43.07
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -1.83
Structure conservation index 0.81
SVM decision value 0.71
SVM RNA-class probability 0.830460
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19254429 120 + 20766785
UUGGAUGGCGGGCGGCGAAGCGAAGGCGGUGGCUGGUGUGGCCAGUGCACGGCCGAGGCGGGAAUACCACUGAGCGGCAACGUUGGUAUUUUAUUAGCCGGGUGGCAACGUCUCGCGGCG
...........((.((((..((...(((.(((((.....))))).)))...((((.(((.(((((((((....(((....))))))))))))....)))...))))..))..)))).)). ( -54.00)
>DroSec_CAF1 45008 119 + 1
UUGGAUGGCGGGCGGCGAAGCGAAGGCGGUGGAUGGUGUGGCCAGUG-GCGGCCGAGGCGGGAAUACCACUGAGCGGCUGCGUUGGUAUUUUACGAGCCGGGUGGCAACGUCUCGCGGUG
...........((.((((.((....))....((((.(((.(((....-(((((((.((.((.....)).))...)))))))(((.(((...))).)))..))).))).)))))))).)). ( -47.10)
>DroSim_CAF1 44031 120 + 1
UUGGAUGGCGGGCGGCGAAGCGAAGGCGGUGGCUGGUGUGGCCAGUGCGCGGCCGAGGCGGGAAUACCACUGAGCGGCUGCGUUGGUAUUUUACGAGCCGGGUGGCAACGUUUCGCGGUG
...........((.((((((((..(.((.(((((.(((..((((..(((((((((.((.((.....)).))...)))))))))))))....))).)))).).)).)..)))))))).)). ( -56.90)
>DroYak_CAF1 45284 120 + 1
UUAGAAGGCGGGCGGCGAAGCGAAGACGGUGGAUGGUGUGGCCAGUGCGCAGUCGGGGCGGAAAUACCAGACAGCGGUUCGGUUGGUAUUUGUUGAGACGAGUGGCAACGUUGCGCGGCA
......(.((.(((((....((((..((.((..((((((..((.((.(.......).))))..))))))..)).)).))))((((.(((((((....))))))).))))))))).)).). ( -47.60)
>consensus
UUGGAUGGCGGGCGGCGAAGCGAAGGCGGUGGAUGGUGUGGCCAGUGCGCGGCCGAGGCGGGAAUACCACUGAGCGGCUGCGUUGGUAUUUUACGAGCCGGGUGGCAACGUCUCGCGGCG
...........((.((((((((..(((.((((((((.....))))).))).)))..(((.(((((((((....(((....))))))))))))....))).........)))))))).)). (-41.83 = -43.07 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:18 2006