Locus 6120

Sequence ID 2R_DroMel_CAF1
Location 19,254,001 – 19,254,107
Length 106
Max. P 0.703357
window9802

overview

Window 2

Location 19,254,001 – 19,254,107
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 91.52
Mean single sequence MFE -27.14
Consensus MFE -21.28
Energy contribution -21.64
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.62
Structure conservation index 0.78
SVM decision value 0.36
SVM RNA-class probability 0.703357
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19254001 106 + 20766785
UCGGCGCAAUUAACCCAUACACUUGCAGAAAAACUGCGACGAAAGCAGUUAGUUAUUUUCGUAGCUGUGUUGCUGCUAUUGUAUUGUUGUUGUAUCACUC--ACACUC
..(..(((((.(((..(((((.((((((.....))))))....(((((((((((((....)))))))....))))))..))))).))))))))..)....--...... ( -26.50)
>DroSec_CAF1 44592 106 + 1
UCGGCGCAAUUAACCCAUACACUUGCAGAAAAACUGCGACGAAAGCAGUUAGUUAUUUUCGUAGCUGUGUUGCUGCUAUUGUAUUGUUGUUGUAUCACUC--ACACUC
..(..(((((.(((..(((((.((((((.....))))))....(((((((((((((....)))))))....))))))..))))).))))))))..)....--...... ( -26.50)
>DroSim_CAF1 43611 108 + 1
UCGGCGCAAUUAACCCAUACACUUGCAGAAAAACUGCGACGAAAGCAGUUAGGUAUUUUCGUAGCUGUGUUGCUGCUAUUGUAUUGUUGUUGUAUCACUCGCACACUC
..(..(((((.(((..(((((...((((....((.((.((((((((......))..)))))).)).))....))))...))))).))))))))..)............ ( -25.90)
>DroEre_CAF1 44871 103 + 1
UCGGCGCAAUUAACGCAUACACUUGCAGAAAAACUGCGACGAAAGCAGUUAGUUAUUUUCGUAGCUAUGCUGCUGCUG-----UUGUUGUUGUGUCACUCACACACUC
..((((((((.(((..........((((.....))))((((..(((((((((((((....))))))).))))))..))-----)))))))))))))............ ( -33.00)
>DroYak_CAF1 44865 99 + 1
UCGGCGCAAUUAACCCAUACACUUGCAGAAAAACUGCGACGAAAGCAGUUAGUUAUUUUCGUAGCUAUG----UGCUG-----UUGUUGUUGUAUCACUUACACACUC
..(..(((((..............((((.....))))(((((.((((..(((((((....)))))))..----)))).-----))))))))))..)............ ( -23.80)
>consensus
UCGGCGCAAUUAACCCAUACACUUGCAGAAAAACUGCGACGAAAGCAGUUAGUUAUUUUCGUAGCUGUGUUGCUGCUAUUGUAUUGUUGUUGUAUCACUC_CACACUC
..(..(((((.(((........((((((.....))))))....(((((((((((((....)))))))....))))))........))))))))..)............ (-21.28 = -21.64 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:17 2006