Locus 6118

Sequence ID 2R_DroMel_CAF1
Location 19,245,487 – 19,245,579
Length 92
Max. P 0.834087
window9797

overview

Window 7

Location 19,245,487 – 19,245,579
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -34.21
Consensus MFE -22.13
Energy contribution -24.37
Covariance contribution 2.24
Combinations/Pair 1.25
Mean z-score -1.47
Structure conservation index 0.65
SVM decision value 0.73
SVM RNA-class probability 0.834087
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19245487 92 + 20766785
GCAGUGCCGGCGACUGCAGUCUCUGCUGCACCGAGCUGACACCUCCAACGCCU------CCACCUCCAGGUGUUGGCUCCUGCUUU---CGAAUGCUGGCA
....((((((((..((((((....))))))..((((..((((((.........------........))))))..)))).......---....)))))))) ( -36.93)
>DroSec_CAF1 36167 92 + 1
GCAGUGCCGGCGACUGCAGUCUCUGCUGCACCGAGCUGACACCUCCACCGCCU------CCACCUCCAGGUGUUGGUUCCUGCUUG---CGAAUGCUGGCA
....((((((((..((((((....))))))((((((.((.(((..((((....------.........))))..)))))..)))))---.)..)))))))) ( -35.42)
>DroSim_CAF1 34826 92 + 1
GCAGUGCCGGCGACUGCAGUCUCUGCUGCACCGAGCUGACACCUCCACCGCCU------CCCCCUCCAGGUGUUGGUUCCUGCUUG---CGAACGCCGGCA
....((((((((..((((((....))))))((((((.((.(((..((((....------.........))))..)))))..)))))---.)..)))))))) ( -39.62)
>DroEre_CAF1 36058 95 + 1
GCAGAGCCGGCGAUUGGAGUCUCUGCUGAACCGAACUGACAACUCCACCAGUU---GGUGGACCGCCAGUUGUUGAUUCCUGCUUG---CGAGUGAUGGCG
(((((..((((((((((.(((....(......)....)))...((((((....---))))))...))))))))))..).))))..(---(.(....).)). ( -32.90)
>DroYak_CAF1 36257 98 + 1
GCAGUGCCGGCGAUUGCAGUCUCUGCUGCACCGAGCUGACAACUCCAGUACCUCCAACUCCAACUCCAGGUGUUGGUUCCUGCUUG---CGAGUGCUGGCG
.....(((((((.((((((((...(((......))).)))......((((...(((((.((.......)).)))))....))))))---))).))))))). ( -35.60)
>DroAna_CAF1 35510 77 + 1
GCAGAGCCGGGGAGUGCAGUCUCUGUUGCACGGCACUGACCG---GAGUCCC------------UCCA---------UCCUGCUUCCUCCCAUUGCUACCA
....(((..(((((.((((((..((((....))))..))).(---(((...)------------))).---------...)))...)))))...))).... ( -24.80)
>consensus
GCAGUGCCGGCGACUGCAGUCUCUGCUGCACCGAGCUGACACCUCCACCGCCU______CCACCUCCAGGUGUUGGUUCCUGCUUG___CGAAUGCUGGCA
.....(((((((..(((((......)))))..((((((((((((.......................))))))))))))..............))))))). (-22.13 = -24.37 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:12 2006