Locus 6117

Sequence ID 2R_DroMel_CAF1
Location 19,243,871 – 19,243,981
Length 110
Max. P 0.809915
window9796

overview

Window 6

Location 19,243,871 – 19,243,981
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.15
Mean single sequence MFE -28.79
Consensus MFE -17.09
Energy contribution -17.53
Covariance contribution 0.45
Combinations/Pair 1.24
Mean z-score -1.68
Structure conservation index 0.59
SVM decision value 0.64
SVM RNA-class probability 0.809915
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19243871 110 - 20766785
CGCCUCAAGGGCUACUACAAGGUGGCGAAGAAGCUGGAGAAGAUGGAGUCCGCCGGCAAUCCCAGCAAGUGGGUU-C---UAUC---GAUUUCAAAUCAAAUAGCU-AUCCAA--CUGAC
........((((((((....)))))).....(((((.....((((((..((((..((.......))..))))..)-)---))))---(((.....)))...)))))-..))..--..... ( -33.70)
>DroPse_CAF1 36970 111 - 1
CGCCUCAAGGGCUACUACAAGGUGGCCAAGAAGCUGGAGAAAAUGGAAUCUGCCGGCAAUCCCAGCAAGUGAGUG-CCGAAAUA---GUUAUAAAAGUACAC--CAAACCAAA--CUGA-
.((((((..(((((((....))))))).....(((((.((...(((......)))....)))))))...)))).)-).....((---(((............--.......))--))).- ( -29.61)
>DroGri_CAF1 44797 111 - 1
CGCCUAAAGGGCUAUUACAAAGUGGCCAAAAAGCUAGAGAAAAUGGAAUCUGCUGGCAAUCCCAACAAGUUCGUA-----AAUUACACUUGUAAAAUU-GAUGCGAGUAUUAA--UUGA-
.(((.....(((((((....)))))))....(((.(((..........))))))))).......((((((..(((-----...)))))))))..((((-((((....))))))--))..- ( -24.80)
>DroYak_CAF1 34631 111 - 1
CGCCUCAAGGGCUACUACAAGGUGGCGAAGAAGCUGGAGAAAAUGGAGUCCGCCGGCAAUCCCAACAAGUGGGUUUG---AAUC---GAUUUCAAAAUAAACAACC-AUCCAA--CUGAC
.(((.....)))........(((((.......(((((.((........))..)))))...((((.....))))((((---((..---...))))))........))-)))...--..... ( -24.50)
>DroAna_CAF1 33834 114 - 1
CGCCUCAAGGGCUACUACAAGGUGGCCAAAAAGCUGGAGAAAAUGGAGUCAGCUGGCAAUCCCAGCAAGUAAGUU-AAAAAAUU---GAUUAUACUUUCUAUAAAU--UCCAAUUCUUAC
.((......(((((((....))))))).....))..(((((..((((((..(((((.....)))))(((((((((-((....))---)))).))))).......))--)))).))))).. ( -31.70)
>DroPer_CAF1 36032 111 - 1
CGCCUCAAGGGCUACUACAAGGUGGCCAAGAAGCUGGAAAAAAUGGAAUCUGCCGGCAAUCCCAGCAAGUGAGUG-CCGAAAUA---GUUAUAAAAGUACAC--CAAACCAAA--CUGA-
.((((((..(((((((....))))))).....(((((......(((......)))......)))))...)))).)-).....((---(((............--.......))--))).- ( -28.41)
>consensus
CGCCUCAAGGGCUACUACAAGGUGGCCAAGAAGCUGGAGAAAAUGGAAUCUGCCGGCAAUCCCAGCAAGUGAGUU_C___AAUA___GAUUUAAAAUUAAACA_CA_AUCCAA__CUGA_
...((((..(((((((....))))))).....(((((.((...(((......)))....)))))))...))))............................................... (-17.09 = -17.53 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:12 2006