Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,239,833 – 19,239,948 |
Length | 115 |
Max. P | 0.666754 |
Location | 19,239,833 – 19,239,948 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.55 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -24.19 |
Energy contribution | -24.42 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -2.94 |
Structure conservation index | 0.72 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19239833 115 - 20766785 AAAAUACUUGGAACGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGACUAUAAAGUUGCCUGUUUCACAAUGUUGCAGACAUCUUUGAAAGUGAAUGACCAUCAUA ....((((((.....((((.........)))).))))))........((((((((....(((((.((.((((..(.....)..)))).)).)))))....)))))).))...... ( -27.80) >DroSec_CAF1 30583 113 - 1 AAAGUACUUGGAUCGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGGCUACAAAGUUGUCUGUUGCACACU--UUCAGACAUCUUUGAUAGUGAAUGCCCAGCAUA ..((((((((.....((((.........)))).))))))))......((((((((.((((((((.((((((.........--..)))))).))))).)))))))))))....... ( -40.60) >DroSim_CAF1 29302 113 - 1 AAAAUACUUGGAUCGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGGCUACAAAGUUGACUGUUGCACACU--UUCAGACCUCUUUGAAAGUGAAUGCCCAGCAUA ......(((((.....)))))((((...((((.(.((((((......)))))).)))))...))))(.(((..(((((((--((((((....))))))))))..))).))))... ( -32.10) >consensus AAAAUACUUGGAUCGGCCAAGAACUCAAUGGCACAAGUGCUCUUCAAGGCAUUCGGCUACAAAGUUGACUGUUGCACACU__UUCAGACAUCUUUGAAAGUGAAUGCCCAGCAUA ....((((((.....((((.........)))).))))))........(((((((.(((.(((((.((.(((.............))).)).)))))..))))))))))....... (-24.19 = -24.42 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:09 2006