Locus 6114

Sequence ID 2R_DroMel_CAF1
Location 19,236,972 – 19,237,086
Length 114
Max. P 0.905132
window9792

overview

Window 2

Location 19,236,972 – 19,237,086
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 92.28
Mean single sequence MFE -34.02
Consensus MFE -29.52
Energy contribution -30.24
Covariance contribution 0.72
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 1.04
SVM RNA-class probability 0.905132
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19236972 114 - 20766785
CAACAAAAGGUCGGACAGAACAAUGCAAAUGCGAUCCAGCAGCAACGGAUUCCCGAUUCGCUGUUUAGAGCCGUAUGCUCGCAUUCACAGCAGGCCAUGUUCUUCAUUGGCCCA
........((((((..((((((..((...(((.....(((((((((((....))).)).))))))..((((.....)))).........))).))..))))))...)))))).. ( -33.30)
>DroSec_CAF1 27719 114 - 1
CAACAAAAGGUCAGACAGAACAAUGCAAAUGCGAUCCAGCAGCCCCGGAUUCCCGAUUCGCUGUUUAGAGCCGGGUGCUCGCAUUCACAGCAGGCCAUGUUCUUCAUUGGCCCA
........((((((..((((((..((...(((......((((((((((.(((..(((.....)))..)))))))).))).)).......))).))..))))))...)))))).. ( -36.52)
>DroSim_CAF1 26389 114 - 1
CAACAAAAGGUCAGACAGAACAAUGCAAAUGCGAUCCAGCAGCACCGGAUUCCCGAUUCGCUGUUUAGAGCCGUGUGCUCGCAUUCACAGCAGGCCAUGUUCUUCAUUGGCCCA
........((((((..((((((..((...(((......((((((((((.(((..(((.....)))..)))))).))))).)).......))).))..))))))...)))))).. ( -34.22)
>DroEre_CAF1 27453 114 - 1
CAACAAAAGGUCAGACGGAACAAUGCAAAUGCGAUCCAGCAGCACCGGAUUCCCGAUUCGCUGCUUAGAGCUAUGUGCUACCAUUCACUGCAGGCGAGGUGCUGCAUUGGCCCA
........((((((..(((....(((....))).))).((((((((((....))...(((((((....(((.....)))..........))).)))))))))))).)))))).. ( -39.64)
>DroYak_CAF1 27535 114 - 1
CAACAAAAGGUCAGACAAAACAAUGCAAAUGCGAUCCAGCAGCACCGGAUUCCCUAUUCGCUGUCUAGAGCUAUGUGCUCCCAUUCACAGCAGGCUAUGUUCUCCAUUGGCCCA
........((((((....((((.(((...(((......))))))((((((.....))))(((((...((((.....))))......))))).))...)))).....)))))).. ( -26.40)
>consensus
CAACAAAAGGUCAGACAGAACAAUGCAAAUGCGAUCCAGCAGCACCGGAUUCCCGAUUCGCUGUUUAGAGCCGUGUGCUCGCAUUCACAGCAGGCCAUGUUCUUCAUUGGCCCA
........((((((..((((((..((...(((.....((((((..(((....)))....))))))..((((.....)))).........))).))..))))))...)))))).. (-29.52 = -30.24 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:08 2006