Locus 6112

Sequence ID 2R_DroMel_CAF1
Location 19,232,462 – 19,232,563
Length 101
Max. P 0.771402
window9786

overview

Window 6

Location 19,232,462 – 19,232,563
Length 101
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 93.63
Mean single sequence MFE -21.99
Consensus MFE -19.47
Energy contribution -19.91
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.89
SVM decision value 0.53
SVM RNA-class probability 0.771402
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19232462 101 - 20766785
GGUACGUGUUAUUCCAACCUCGGGUAGCUAAGUAAA---AAAUAAAAAAAUAAAAGCUGUCUGGCACUCGAAGCGACACUUUGUCUGCUGAUAAAGUGCAACAA
.(((((((((.(((.....((((..((((.......---...............))))..)))).....)))..)))))((((((....))))))))))..... ( -23.35)
>DroSec_CAF1 23568 93 - 1
GGUACGUGUUUUUCCAACCUCGGGUAGCUAAAUAAA---AA--------AUAAAAGCUGUCUGGCACUCGAAGCGACACUUUGUCUGCUGAUAAAGUGCAACAA
.(((((((((((((.....((((..((((.......---..--------.....))))..)))).....)))).)))))((((((....))))))))))..... ( -23.24)
>DroSim_CAF1 22089 93 - 1
GGUACGUGUUUUUCCAACCUCGGGUAGCUAAAUAAA---AA--------AUAAAAGCUGUCUGGCACUCGAAGCGACACUUUGUCUGCUGAUAAAGUGCAACAA
.(((((((((((((.....((((..((((.......---..--------.....))))..)))).....)))).)))))((((((....))))))))))..... ( -23.24)
>DroEre_CAF1 23178 93 - 1
GGUACGUGUUUUUCCAACCUCGGGUACCUAAAUAAA---AA--------AUAAAAGCUGUCUGGCACUCGAAGCGACACUUUGUCUGCUGAUAAAGUGCAACAA
(((((.((............)).)))))........---..--------......(((.((........)))))(.(((((((((....))))))))))..... ( -21.10)
>DroYak_CAF1 23135 96 - 1
GGUACGUGUUUUUCCAACCUCGGAUACCUAAAUAAAAAAAA--------AUAAAAGCUGUCUGGCACUCGAAGCGACACUUUGUCUGCUGAUAAAGUGCAACAA
.(((((((((((((.....(((((((.((............--------.....)).))))))).....)))).)))))((((((....))))))))))..... ( -19.03)
>consensus
GGUACGUGUUUUUCCAACCUCGGGUAGCUAAAUAAA___AA________AUAAAAGCUGUCUGGCACUCGAAGCGACACUUUGUCUGCUGAUAAAGUGCAACAA
.(((((((((((((.....((((((((((.........................)))))))))).....)))).)))))((((((....))))))))))..... (-19.47 = -19.91 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:02 2006