Locus 6110

Sequence ID 2R_DroMel_CAF1
Location 19,228,504 – 19,228,622
Length 118
Max. P 0.858240
window9783

overview

Window 3

Location 19,228,504 – 19,228,622
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.62
Mean single sequence MFE -39.85
Consensus MFE -23.35
Energy contribution -24.47
Covariance contribution 1.11
Combinations/Pair 1.17
Mean z-score -2.43
Structure conservation index 0.59
SVM decision value 0.82
SVM RNA-class probability 0.858240
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19228504 118 - 20766785
UGGUCAUGGUAAACAU--GGCCGAGACAAUGUAGCUGCUUUUCGCUGGUUGGCCCAACUAAUUAGCGAAAGUAUUGAGCCAAGCCUCGGCCUGGUCCAGUCUACACCAGCACACUCCAGA
.(((((((.....)))--))))(((....(((.((((...((((((((((((.....))))))))))))((.((((..(((.((....)).)))..))))))....)))))))))).... ( -45.30)
>DroSec_CAF1 19608 118 - 1
UGGUCAUGGUAAACAU--GGCCGAGACAAUGUAGCUGCUUUUCGCUGGUUGGCCCAACUAAUUAGCGAAAGUAUUGAGCCAAGCCUCGGCCUGGUCCAGUCUACUCCAGCACACUCCAGA
.(((((((.....)))--))))(((....(((.((((...((((((((((((.....))))))))))))((.((((..(((.((....)).)))..))))))....)))))))))).... ( -45.30)
>DroSim_CAF1 18168 118 - 1
UGGUCAUGGUAAACAU--GGCCGAGACAAUGUAGCUGCUUUUCGCUGGUUGGCCCAACUAAUUAGCGAAAGUAUUGAGCCAAGCCUCGGCCUGGUCCAGUCUACUCCAGCGCACUCCAGA
.(((((((.....)))--))))(((....(((.((((...((((((((((((.....))))))))))))((.((((..(((.((....)).)))..))))))....)))))))))).... ( -44.90)
>DroEre_CAF1 19287 102 - 1
UGGUCAUGGUGAACAU--GGCCGAGACAAAGUAGCUGCUCUUCGCUGA-UGGCCCAACUAAUUAGCGAAAGUAUGGAGUCAAACCUCGGCCUGGUCC---------------ACUCCAGA
.(((((((.....)))--)))).............((((.((((((((-(..........)))))))))))))((((((...(((.......)))..---------------)))))).. ( -34.10)
>DroYak_CAF1 19036 118 - 1
UGGUCAUGGUAAACAU--GGCCGAGACAAAGUAGCUGCUUUUCGCUGGUUGGCCCAACUAAUUAGCGAAAGUAUUGAGCCGAACCCCGGCCUGGUCCAGUCUACUCCAGCACACUCCAGA
.(((((((.....)))--))))(((....((((((((.((((((((((((((.....)))))))))))))).(((..((((.....))))..))).))).)))))........))).... ( -40.50)
>DroAna_CAF1 17982 108 - 1
UC-----UGAAAACAAAGUGCCGAGU---UGUCGCUGGUAU----UGGUUUGCCCAACUGAUUAGCAACGAUAUUGGACUAAACUUCGGCCUACUCCGGCCCAUACCAGCCCAGACCAGA
((-----((.......(((.((((((---(((.((((((.(----(((.....))))...)))))).))))).))))))).......((((......))))..........))))..... ( -29.00)
>consensus
UGGUCAUGGUAAACAU__GGCCGAGACAAUGUAGCUGCUUUUCGCUGGUUGGCCCAACUAAUUAGCGAAAGUAUUGAGCCAAACCUCGGCCUGGUCCAGUCUACUCCAGCACACUCCAGA
..................(((((((..........((((.((((((((((((.....))))))))))))))))...........)))))))............................. (-23.35 = -24.47 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:59 2006