Locus 6107

Sequence ID 2R_DroMel_CAF1
Location 19,222,937 – 19,223,049
Length 112
Max. P 0.795030
window9778

overview

Window 8

Location 19,222,937 – 19,223,049
Length 112
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 85.11
Mean single sequence MFE -38.14
Consensus MFE -23.42
Energy contribution -24.72
Covariance contribution 1.30
Combinations/Pair 1.06
Mean z-score -2.57
Structure conservation index 0.61
SVM decision value 0.60
SVM RNA-class probability 0.795030
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19222937 112 - 20766785
UACGCAUCUUGGCCCAGGAACCUGUUGCGCUGACUUGACAGCCCGUCAAUCCGCAAAGUCCCUGGCACUGGCCAAAAAA------UGGGAAAACAGCCGGAAUUGGCCAACAACCGCA
...((......(((.(((.((...(((((..((.(((((.....)))))))))))).)).))))))..(((((((....------(((........)))...)))))))......)). ( -35.90)
>DroSec_CAF1 14056 110 - 1
UUCGCAUCUUGGC-CAGGAACCUGUUGCGCUGACUUGACAGCCCGUCAAUCCGCAAAGUCCCUGGCCCUGGCCAAAAAA------UGGGA-AACAGCCGGAAUUGGCCAACAACCGCA
...((.....(((-((((.((...(((((..((.(((((.....)))))))))))).)).))))))).(((((((....------(((..-.....)))...)))))))......)). ( -41.80)
>DroSim_CAF1 12507 111 - 1
UUCGCAUCUUGGC-CAGGAACCUGUUGCGCUGACUUGACAGCCCGUCAAUCCGCAAAGUUCCUGGCCCUGGCCAAAAAA------UGGGAAAACAGCCGGAAUUGGCCAACAACCGCA
...((.....(((-(((((((...(((((..((.(((((.....)))))))))))).)))))))))).(((((((....------(((........)))...)))))))......)). ( -46.50)
>DroEre_CAF1 12753 111 - 1
UUCGCAUCUUGCC-CAGGAACCUGUUG--CUGCCAUGACAGCUCGUCAAUCCGAAAAGUCCCUGGCUGUGGCCAAAAAAA----AUGAGAAAACAGCCGGAAUUGGCCAGCAACCGCA
...((.((((...-.))))....((((--((((((((((.....)))).............((((((((..(((......----.)).)...))))))))...))).))))))).)). ( -34.80)
>DroYak_CAF1 13157 104 - 1
G---AAC---------CGAACCUGUUG--CUGGCAUGUCAGCCCGUCAAUCCGAAAAGUCCCUGGCCGUGGCCAAAAAACAGCAUUGGGAAAACAGCCGGAAUUGGCCAGCAACCGCA
.---...---------.......((((--((((((((......)))(((((((.....((((((((....))))............)))).......))).))))))))))))).... ( -31.70)
>consensus
UUCGCAUCUUGGC_CAGGAACCUGUUGCGCUGACUUGACAGCCCGUCAAUCCGCAAAGUCCCUGGCCCUGGCCAAAAAA______UGGGAAAACAGCCGGAAUUGGCCAACAACCGCA
...((.(((((...)))))...(((((.((((......))))..(((((((((.....((((((((....))))............)))).......))).)))))))))))...)). (-23.42 = -24.72 +   1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:55 2006