Locus 6106

Sequence ID 2R_DroMel_CAF1
Location 19,219,978 – 19,220,092
Length 114
Max. P 0.561948
window9777

overview

Window 7

Location 19,219,978 – 19,220,092
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 88.68
Mean single sequence MFE -33.56
Consensus MFE -30.66
Energy contribution -30.58
Covariance contribution -0.08
Combinations/Pair 1.23
Mean z-score -1.26
Structure conservation index 0.91
SVM decision value 0.06
SVM RNA-class probability 0.561948
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19219978 114 + 20766785
CUCGAGCCGGAAAAAGUCUCUGUAGGGUAAACAAGGCGGGUUCCAUGGCUCUGCGAAGUCUUUCUGCCGAGCUUCAGGUACAGUGGAGGUUCUACUGUGUGAAAGUGUAGUUAA
((.(((((((..((((.((.((((((((...((.((......)).)))))))))).)).))))...))).)))).)).((((((((.....))))))))............... ( -35.10)
>DroSec_CAF1 9326 114 + 1
CUCGAGCCGGAAAAAGUCUCCGUAGGGUAAACAAGGCGGGUUCCAUGGCUCUGCGAAGUCUUUCUGCCGAGCUUCGAAUACAGUGGAGGUUCUACUGUGUGAAAUUAUAGUUUA
.(((((((((..((((.((.((((((((...((.((......)).)))))))))).)).))))...))).)).))))(((((((((.....))))))))).............. ( -39.10)
>DroSim_CAF1 9409 114 + 1
CUCGAGCCGGAAAAAGUCUCUGUAGGGUAAACAAGGCGGGUUCCAUGGCUCUGCGAAGUCUUUCUGCCGAGCUUCGAAUACAGUGGAGGUUCUACUGUGUGAAAUUAUAGUUAA
.(((((((((..((((.((.((((((((...((.((......)).)))))))))).)).))))...))).)).))))(((((((((.....))))))))).............. ( -37.50)
>DroEre_CAF1 9492 113 + 1
CUCCAGCCGGAAAAAGUCUCUGUGGAGUAAACA-AGCAAGUUCCGUGGCUCUGCGAAGUCUUCCUGCCGAGCUUCAGAUACAGUGGAAGUUCUAUUGAAUAAAAUUUAAAUUUC
((..((((((...(((.((.((..((((.(((.-.....))).....))))..)).)).)))....))).)))..))...((((((.....))))))................. ( -25.90)
>DroYak_CAF1 9826 114 + 1
CUCGAGCCGGAAAAAGUCUCUGUUGGGUAAACAAAGCAAGUUCCAUGGCUCUGCGAAGUCUUCCUGCCGAGCUUCAGAUACAGUAGAUGUUCUAUUGUAUAAAAUUAUAGUUUA
...(((((((((...(.((.((((.....)))).)))...))))..)))))...((((.(((......)))))))..(((((((((.....))))))))).............. ( -30.20)
>consensus
CUCGAGCCGGAAAAAGUCUCUGUAGGGUAAACAAGGCGGGUUCCAUGGCUCUGCGAAGUCUUUCUGCCGAGCUUCAGAUACAGUGGAGGUUCUACUGUGUGAAAUUAUAGUUUA
((.(((((((..((((.((.((((((((.(((.......))).....)))))))).)).))))...))).)))).))(((((((((.....))))))))).............. (-30.66 = -30.58 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:54 2006