| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,219,660 – 19,219,772 |
| Length | 112 |
| Max. P | 0.743157 |
| Location | 19,219,660 – 19,219,772 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -38.80 |
| Consensus MFE | -27.34 |
| Energy contribution | -28.15 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.743157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19219660 112 - 20766785 CCACUAUCACUAUCAUAGGCCGAAUGCUGUUGAUUUGCAUUACAGCGGCGGAGUGGGG------GAAGUCGCUUAUCAGCAAUGGGAGCCACAGCAGCAGCGGGCUGAUAGUGAUAAC ....(((((((((((..(.(((..((((((((....((......))(((.((((((..------....)))))).(((....)))..))).)))))))).))).)))))))))))).. ( -45.10) >DroSec_CAF1 9012 112 - 1 CCACUAUCACUAUCAUAGGCCGAAUGCUGUUGAUUUGCAUUACAGCGGCGGAGUGGGG------GGAGUCGCUUAUCAGCAAUGAGAGCCACAGCAGCAGCGGGCUGAUAGUGAUAAC ....(((((((((((..(.(((..((((((((....((......))(((.((((((..------....)))))).(((....)))..))).)))))))).))).)))))))))))).. ( -46.00) >DroSim_CAF1 9095 112 - 1 CCACUAUCACUAUCAUAGGCCGAAUGCUGUUGAUUUGCAUUACAGCGGCGGAGUGGGG------GGAGUCGCUUAUCAGCAAUGGGAGCCACAGCAGCAGCGGGCUGAUAGUGAUAAC ....(((((((((((..(.(((..((((((((....((......))(((.((((((..------....)))))).(((....)))..))).)))))))).))).)))))))))))).. ( -45.10) >DroEre_CAF1 9213 105 - 1 CCA------CUAUCAUAGGCCGAAUGCUGUUGAUUUGCAUUACAGCGGCGAAGUGGG-------GGAAUCGCUUAUCGGCAAUGGGAGCCACAGCAGCAGCGGGCUGAUAAUGAUAAC ...------.((((((..(((((.((((((((..........))))))))((((((.-------....)))))).)))))..((..((((...((....)).))))..)))))))).. ( -34.80) >DroYak_CAF1 9524 106 - 1 CCA------CUAUCAUAGGCCGAAUGCUGUUGAUUUGCAUUACAGCGGCGGAGUGGGG------GGAAUCGCUUAUCAGCACUGGGAGCCACAGCAGCAGCGGGCUGAUAGUGAUAAC .((------((((((..(.(((..((((((((....((......))(((.((((((..------....)))))).(((....)))..))).)))))))).))).)))))))))..... ( -40.50) >DroAna_CAF1 8911 107 - 1 AAA------CUAUUAUAGGCCGAAUGCCGGAGAUUUGCAUUAAAGUGAAGCAGAAAAAAAAAAAAUAGGCUCUUAUCAGUAAUGGGAGCAACAGCAGCAACGAGU-----CUGAUAAC ...------......(((((((..(((.(....(((((.((.....)).)))))..............((((((((.....))))))))..).)))....)).))-----)))..... ( -21.30) >consensus CCA______CUAUCAUAGGCCGAAUGCUGUUGAUUUGCAUUACAGCGGCGGAGUGGGG______GGAGUCGCUUAUCAGCAAUGGGAGCCACAGCAGCAGCGGGCUGAUAGUGAUAAC ..........((((((.((((...((((((((....((......))(((.((((((............)))))).(((....)))..))).))))))))...))))....)))))).. (-27.34 = -28.15 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:53 2006