Locus 6104

Sequence ID 2R_DroMel_CAF1
Location 19,218,548 – 19,218,653
Length 105
Max. P 0.625091
window9775

overview

Window 5

Location 19,218,548 – 19,218,653
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 88.70
Mean single sequence MFE -26.52
Consensus MFE -25.09
Energy contribution -25.20
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.25
Structure conservation index 0.95
SVM decision value 0.19
SVM RNA-class probability 0.625091
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19218548 105 + 20766785
AUAUGGUGGCCAUGCCGCAACCACACUUAACCCACCAUCGAGCCCACAUCCUUUUCAGGACGCAGAACGCAGAACGCAGGACACAGGACCCAGGGCUCGGGACUC
...((((((......................))))))((((((((...((((....)))).((.....))......................))))))))..... ( -26.95)
>DroSec_CAF1 7907 91 + 1
AUAUGACGGCCAUGCCGCAACCACACUUAACCCACCAUCGAGCCCACAUCCUUUUCAGGACUC--------------AGGACACAGGACCCAGGGCUCGGGACUC
...((.((((...))))))..................((((((((...((((....))))...--------------.((.........)).))))))))..... ( -24.90)
>DroSim_CAF1 7986 91 + 1
AUAUGGCGGCCAUGCCGCAACCACACUUAACCCACCAUCGAGCCCACAUCCUUUUCAGGACUC--------------AGGACACAGGACCCAGGGCUCGGGACUC
.....(((((...)))))...................((((((((...((((....))))...--------------.((.........)).))))))))..... ( -27.70)
>consensus
AUAUGGCGGCCAUGCCGCAACCACACUUAACCCACCAUCGAGCCCACAUCCUUUUCAGGACUC______________AGGACACAGGACCCAGGGCUCGGGACUC
.....(((((...)))))...................((((((((...((((....))))..................((.........)).))))))))..... (-25.09 = -25.20 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:52 2006