| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,212,883 – 19,212,978 |
| Length | 95 |
| Max. P | 0.846386 |
| Location | 19,212,883 – 19,212,978 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 83.32 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -21.91 |
| Energy contribution | -20.83 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19212883 95 - 20766785 ACGUUAGUCUUUCGUAUCUUUUGGCUCUGUACAGAGGGC--GGGGAGUUGGUUACCAACUCGUCCCGCGAU----AGAUGCAACCUACUAUCUACAUAAAA ..(.((((.....((((((.((..((((....)))).((--((((((((((...)))))))..))))))).----)))))).....)))).)......... ( -30.00) >DroPse_CAF1 2372 93 - 1 ----UAGUCUUUUGUAG----UGGCGCUGUACAAAGUGCCGGGGGAAUUGGUUACCAACUCGCCCAACGAAAAUAAGAUUCAAGCUAGGAUCUACAUAAAA ----.....((((((..----.((((((......))))))(((.((.((((...)))).)).))).))))))...((((((......))))))........ ( -30.00) >DroSim_CAF1 2338 95 - 1 ACGUUAGUCUUUCGUAUCUUUCGGCUCUGUACAGAGGGC--GGGGAGUUGGUUACCAACUCGUCCCGCGAU----AGAUGCAACCUACUAUCUACAUAAAA ..(.((((.....((((((.((..((((....)))).((--((((((((((...)))))))..))))))).----)))))).....)))).)......... ( -32.60) >DroEre_CAF1 2330 91 - 1 ACGUUAGUCUUUCGUAU----CGGCUCUGUACAGACGGC--GGGGAGUUGGUUACCAACUCGCCCCGCGAU----AGAUGCAACCUACUAUCUACAUAAAA .............(((.----..(((((((...(.(((.--((.(((((((...))))))).)))))).))----))).))....)))............. ( -27.20) >DroYak_CAF1 2335 91 - 1 ACGAUAGUCUUUCGUAU----CGGCUCUGUACAGAGGGC--GGGGAGUUGGUUACCAACUCGUCCCGCGAU----AGAUGCAACCUACUAUCUACAUAAAA ..((((((.....((((----(..((((....)))).((--((((((((((...)))))))..)))))...----.))))).....))))))......... ( -34.00) >DroPer_CAF1 2372 93 - 1 ----UAGUCUUUUGUAG----UGGCGCUGUACAAAGUGCCGGGGGAAUUGGUUACCAACUCGCCCAACGAAAAUAAGAUUCAAGCUAGGAUCUACAUAAAA ----.....((((((..----.((((((......))))))(((.((.((((...)))).)).))).))))))...((((((......))))))........ ( -30.00) >consensus ACGUUAGUCUUUCGUAU____CGGCUCUGUACAGAGGGC__GGGGAGUUGGUUACCAACUCGCCCCGCGAU____AGAUGCAACCUACUAUCUACAUAAAA ...........((((........(((((......)))))..((((((((((...))))))).))).)))).....(((((........)))))........ (-21.91 = -20.83 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:51 2006