Locus 6102

Sequence ID 2R_DroMel_CAF1
Location 19,207,772 – 19,207,867
Length 95
Max. P 0.759453
window9773

overview

Window 3

Location 19,207,772 – 19,207,867
Length 95
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.74
Mean single sequence MFE -24.77
Consensus MFE -19.51
Energy contribution -19.32
Covariance contribution -0.19
Combinations/Pair 1.27
Mean z-score -1.35
Structure conservation index 0.79
SVM decision value 0.50
SVM RNA-class probability 0.759453
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19207772 95 + 20766785
UUUUGCAGGUACGGCAGGUCGAACGUGAAGUCCACUUCGUAGAAUGAUAUGAUGGACAGCUGCGUGUUCUGCAACAAAAAA-AAAU----CAUA-AUAACA---
..(((((((.(((((((.(((....))).(((((..(((((......))))))))))..)))).)))))))))).......-....----....-......--- ( -25.50)
>DroPse_CAF1 15250 97 + 1
UUUUGCAGAUAGGCCAGGUCGAAGGUGUAGUCUACCUCGUAGAAUGAUAUGAUGGACAGUUGGGUGUUCUGCAAGGGAAAUCGAUU----AGAAAUGAACG---
(((((((((.(.(((..(((.(..((((..(((((...)))))...))))..).))).....))).)))))))))).....((.((----(....))).))--- ( -25.50)
>DroSim_CAF1 15332 96 + 1
UUUUGCAGGUAGGGCAGGUCGAACGUGAAGUCCACUUCGUAGAAUGAUAUGAUGGACAGCUGCGUGUUCUGCAACAAAAAAGAACU----CAUA-GUAACA---
..(((((((..(.((((.(((....))).(((((..(((((......))))))))))..)))).)..)))))))............----....-......--- ( -24.70)
>DroEre_CAF1 15315 98 + 1
UUUUGCAGGUAGGGCAGGUCGAACGUGAAGUCCACUUCGUAGAAUGAUAUGAUGGACAGCUGGGUGUUCUGCGAGAGAAGA-ACGU----CGGG-UUAAUGUUU
.(((((.......)))))..((((((...(((((..(((((......))))))))))((((.(..(((((.(....).)))-))..----).))-)).)))))) ( -29.80)
>DroAna_CAF1 15856 99 + 1
UUUUGCAGGUACGCCAGGUCAAAGGUGAAGUCCACUUCGUAGAAUGAUAUGAUGGAGAGUUGGGUGUUCUUGAAGAAGAGA-AAGAUAAACUUA-UUAACA---
((((.((((.(((((((.((...((((.....))))(((((......)))))....)).)).))))).)))).))))....-............-......--- ( -18.80)
>DroPer_CAF1 15177 97 + 1
UUUUGCAGAUAGGCCAGGUCGAAGGUGUAGUCUACCUCGUAGAAUGAUAUGAUGGACAGUUGGGUGUUCUGCAAGGGAAAUCGAUA----AGAAAUGAACG---
(((((((((.(.(((..(((.(..((((..(((((...)))))...))))..).))).....))).))))))))))..........----...........--- ( -24.30)
>consensus
UUUUGCAGGUAGGCCAGGUCGAACGUGAAGUCCACUUCGUAGAAUGAUAUGAUGGACAGCUGGGUGUUCUGCAAGAAAAAA_AAGU____CGUA_UUAACA___
(((((((((....((((.(((....))).(((((..(((((......))))))))))..))))....)))))))))............................ (-19.51 = -19.32 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:50 2006