Locus 6101

Sequence ID 2R_DroMel_CAF1
Location 19,207,547 – 19,207,652
Length 105
Max. P 0.605592
window9772

overview

Window 2

Location 19,207,547 – 19,207,652
Length 105
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 75.42
Mean single sequence MFE -34.77
Consensus MFE -17.99
Energy contribution -18.77
Covariance contribution 0.78
Combinations/Pair 1.24
Mean z-score -1.70
Structure conservation index 0.52
SVM decision value 0.15
SVM RNA-class probability 0.605592
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19207547 105 - 20766785
GGCUUUCCGACCAGAUUCCCCCUACCGCGAGGUGAUGGGAAAGAUUGUGGCGGACAUAAACGCAGCCAUGGAAACGGGAGAUAUCUGAGGAG-AUUCGCAAAGCGA
.((((((((.(((.((((((..((((....))))..)))))....).))))))).......((..((.((....)))).((.((((....))-)))))).)))).. ( -35.10)
>DroVir_CAF1 17826 96 - 1
GGCAUUCAAACCGGAUUCGCCAUAUCGCGAGGUGAUGGGCAAAAUUGUCGCAGACAUUAACUCGGCCAUGGAAACGGGCGACAUAUGAGCAG------CAG---A-
.((((((.....))))..(((((((..((((.(((((.((.........))...))))).))))(((.((....)))))...))))).)).)------)..---.- ( -26.60)
>DroPse_CAF1 15040 90 - 1
GGCCUUCAAGCCGGACUCGCCCUACCGCGAGGUUAUGGGCAAGAUUGUGGCCGACAUCAACUCCGCCAUGGAGACGGGCGACAUCUGAGG----------------
(((......)))...(((((((.(((....)))...)))).((((.((.((((....)..((((.....))))...))).))))))))).---------------- ( -36.80)
>DroEre_CAF1 15090 105 - 1
GGCCUUCCGACCGGACUCCCCCUACCGCGAGGUGAUGGGAAAGAUCGUGGCGGACAUAAAUGCCGCCAUGGAAACGGGAGACAUCUGAGGAG-AUCCGCCAAGCGA
(((((((((.......((((..((((....))))..))))....(((((((((.((....)))))))))))...))))))........((..-..)))))...... ( -44.50)
>DroMoj_CAF1 16346 103 - 1
GGCAUUCAAAACGGAUUCACCAUAUCGUGAGGUAAUGGGCAAAAUUGUAGCAGAUAUUAACACAGCCAUGGAAACGGGUGAUAUUUGAGUUGGAUGUGCAG---AA
.((((((((..((((((((((.((((....))))...(((......(((.....))).......))).((....))))))).)))))..))))))))....---.. ( -28.82)
>DroPer_CAF1 14967 90 - 1
GGCCUUCAAGCCGGACUCGCCCUACCGCGAGGUUAUGGGCAAGAUUGUGGCCGACAUCAACUCCGCCAUGGAGACGGGCGACAUCUGAGG----------------
(((......)))...(((((((.(((....)))...)))).((((.((.((((....)..((((.....))))...))).))))))))).---------------- ( -36.80)
>consensus
GGCCUUCAAACCGGACUCGCCCUACCGCGAGGUGAUGGGCAAGAUUGUGGCAGACAUAAACUCCGCCAUGGAAACGGGCGACAUCUGAGGAG______CA______
...........((((.((((((((((....))))............(((((.(.........).)))))(....)))))))..))))................... (-17.99 = -18.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:49 2006