Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,200,824 – 19,200,942 |
Length | 118 |
Max. P | 0.573149 |
Location | 19,200,824 – 19,200,942 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -22.88 |
Energy contribution | -23.04 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.26 |
Mean z-score | -1.87 |
Structure conservation index | 0.59 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19200824 118 + 20766785 GCUUAGCUGCGCUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCGCCUGAUCAAGAACAAUAUGUGUUGUUAUAGGCGGCGAAAAGGAAUGAGUACUUUUCUGUGGCUGAAUAGCU (((((((..((((...........(((((((((....)))))))))(((((......((((((....)))))).))))))))((((((.........)))))).)..))))...))). ( -40.80) >DroSec_CAF1 8401 118 + 1 GCUUAGCUGCGGUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCUCCUGAUCAAGAGCAAUAGGUGUUGUUAUAGGCGGCGAAGCGGAAUGAGUACUCUUCUGUGGCUGAAUGGCU (((((((..(((.(((((((.((((((((((((....))))))))).((((..(((.(.(....).).)))...)))))))))))((.......))..))).)))..))))...))). ( -38.90) >DroSim_CAF1 8410 118 + 1 GCUUAGCUGCGGUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCGCCUGAUCAAGAACAAUAGGUGUUGUUAUAGGCGGCGAAGCGGAAUGAGUACUCUUCUGUGGCUGAAUGGCU (((((((..(((.(((((((.((.(((((((((....)))))))))(((((......((((((....)))))).)))))))))))((.......))..))).)))..))))...))). ( -41.30) >DroEre_CAF1 8474 103 + 1 U---------------UUAGACUGGACGCAGCUUUUGGGUUGUACAGCCUGCUCAGGAACAACAGGUGUUGUUAGCGGCGGCGGGAAAGAUUGAGUAUUUUUCUGUUGCUGAAUGGCU .---------------..((.(((...((((((....)))))).))).))((.((..((((((....))))))..((((((((((((((........))))))))))))))..)))). ( -31.60) >DroYak_CAF1 8537 115 + 1 GCUUGGCUGCGGUGGAUUAGACUGGAUGCAGCUUUUGGGUUGUACAGCCUGAUUUAGAACAUUAGGUGU---AAUCGGCGGCGGGGAGUAUUGAGUACUCUUCUGUGGCUGAAUGGCU (((.((((((.((.(((((.(((.((((...((.(..((((....))))..)...))..)))).))).)---)))).)).))(((((((((...)))))))))...))))....))). ( -41.80) >consensus GCUUAGCUGCGGUGGAUUCGACUGGGUGCAGCUUUUAGGUUGUACCGCCUGAUCAAGAACAAUAGGUGUUGUUAUAGGCGGCGAAGAGGAAUGAGUACUCUUCUGUGGCUGAAUGGCU ........................(((((((((....)))))))))(((...((((.((((.....)))).))...(((.((((((((.........)))))).)).)))))..))). (-22.88 = -23.04 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:48 2006