Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,315,767 – 1,315,917 |
Length | 150 |
Max. P | 0.998592 |
Location | 1,315,767 – 1,315,887 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -26.90 |
Energy contribution | -28.36 |
Covariance contribution | 1.46 |
Combinations/Pair | 1.03 |
Mean z-score | -1.26 |
Structure conservation index | 0.89 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1315767 120 + 20766785 UUUUUGGCAGUGUUUGCUUAGGUCUAAGCAGAAAAUCAUUAGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACG .....(((..(((..((((((..((((...(((((((.((((..((.((......)).)).))))))))))).))))))))))(((((....))))).))).....)))........... ( -29.30) >DroSec_CAF1 34166 120 + 1 UUUUUGGCAGUGUUUGCUUAGGUCUAAGCUGAAAAUCAUUAGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCGAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACG .....(((..(((..((((((..((((..((((((((.((((..((.((......)).)).))))))))))))))))))))))(((((....))))).))).....)))........... ( -29.20) >DroSim_CAF1 13115 120 + 1 UUUUUGGCAGUGUUUGCUUAGGUCUAAGCUGAAAAUCAUUAGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCGAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACG .....(((..(((..((((((..((((..((((((((.((((..((.((......)).)).))))))))))))))))))))))(((((....))))).))).....)))........... ( -29.20) >DroEre_CAF1 16560 120 + 1 UUUUUGGCAGUGUUUGCUUAGGUCUAAGCCGAAAAUCAUCAGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCACAAUUAGGCCCUAAUAGAACG .((((((..((((((((...(((....))).....(((.....))).....))))))))..)))))).(((((((((((((..(((((....))))).....))))...))))))))).. ( -29.10) >DroYak_CAF1 3620 120 + 1 UUUUUGGCAGUGUUUGCUUAGGUCUAAGCAGAAAAUCAUUAGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCUCAAUUAGGCCUUAAUAGAACG ..(((((((...((((((((....))))))))...(((.....)))..))).))))..(((.((((((.....((((.((((.(((((....))))))))).))))))))))..)))... ( -33.70) >consensus UUUUUGGCAGUGUUUGCUUAGGUCUAAGCAGAAAAUCAUUAGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACG .....(((.......((((((..((((...(((((((.((((..((.((......)).)).))))))))))).))))))))))(((((....))))).........)))........... (-26.90 = -28.36 + 1.46)
Location | 1,315,807 – 1,315,917 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -32.04 |
Consensus MFE | -28.52 |
Energy contribution | -29.82 |
Covariance contribution | 1.30 |
Combinations/Pair | 1.06 |
Mean z-score | -2.27 |
Structure conservation index | 0.89 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1315807 110 + 20766785 AGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACGACCAUAGAGAGGCGCUACAUACAC----------UGUGCA .((......((((.....((((((.((((.(((((((((((..(((((....))))).....))))...)))))))...)))).)))))).)))).....))..----------...... ( -30.90) >DroSec_CAF1 34206 120 + 1 AGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCGAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACGACCAUAGAGAGGCGCUACAUACACUCACACUCACUCGGCA .(((((...((((.....((((((.((((.(((((((((((..(((((....))))).....))))...)))))))...)))).)))))).))))...................))))). ( -31.25) >DroSim_CAF1 13155 120 + 1 AGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCGAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACGACCAUAGAGAGGCGCUACAUACACUCACACUCACUCGGCA .(((((...((((.....((((((.((((.(((((((((((..(((((....))))).....))))...)))))))...)))).)))))).))))...................))))). ( -31.25) >DroEre_CAF1 16600 110 + 1 AGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCACAAUUAGGCCCUAAUAGAACGACCAUAGAGAGGCGCUACAUACAC----------UGUGCA .((......((((.....((((((.((((((((((((((((..(((((....))))).....))))...))))))))..)))).)))))).)))).....))..----------...... ( -33.80) >DroYak_CAF1 3660 110 + 1 AGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCUCAAUUAGGCCUUAAUAGAACGACCAUAGAGAGACGCUAGAUACAC----------UGUGCA ........((((((....((((((.(((((((((((((((((.(((((....)))))))).....)))..)))))))..)))).))))))..(....)......----------)))))) ( -33.00) >consensus AGUUGAAAUGCGCAAAUAUCUCUAAGGUUUUUAUUAGCUGAGCGGCAAGUAAUUGCCCACAAUUAGGCCUUAAUAGUACGACCAUAGAGAGGCGCUACAUACAC__________UGUGCA .((......((((.....((((((.((((.(((((((((((..(((((....))))).....))))...)))))))...)))).)))))).)))).....)).................. (-28.52 = -29.82 + 1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:12 2006