Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,178,993 – 19,179,089 |
Length | 96 |
Max. P | 0.700836 |
Location | 19,178,993 – 19,179,089 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -12.72 |
Energy contribution | -14.20 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.05 |
Mean z-score | -1.94 |
Structure conservation index | 0.46 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19178993 96 - 20766785 UAUGCUGCUUU----------AUGCUGCGCCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGAAAUGAAA-------AGGAAAGAAGAAAAAAAAAGAAACU .......((((----------(((((((.....)))............(((((......)))))).)))))))........-------......................... ( -13.60) >DroSec_CAF1 62668 102 - 1 UAUGCUGCUUU----------AUGCUGCGGCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGACAUGAGGCUGCCUCGGCGAAGCAGAAGA-AAAAUAAACU ....(((((((----------..((((.(((.(((.............(((((......)))))..((((....))))..)))))).)))))))))))....-.......... ( -32.00) >DroSim_CAF1 59789 102 - 1 UAUGCUGCUUU----------AUGCUGCGGCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGACAUGAGGCUGCCUCGGCGAAGCAGAAGA-AAAAUAAACU ....(((((((----------..((((.(((.(((.............(((((......)))))..((((....))))..)))))).)))))))))))....-.......... ( -32.00) >DroEre_CAF1 70354 100 - 1 UGUGCUGCUUUGUGCUGCUUUAUGCUGCGGCGAGCAAACUAAACAAAAAUCCUGCGAAAAGGAUGCCAUGCUGGCAUGUUGCC---------AUG--UA-CG-AAAUAAAACU .(((((((((...(((((........)))))))))).....((((...(((((......)))))(((.....))).))))...---------..)--))-).-.......... ( -28.00) >DroYak_CAF1 70192 112 - 1 UAUGCUGCUUUAUGCUGCCUUGUGCUGCGGGGAGCAAACUAAACAAAAAUCCUGCGAAAAGGAUGCCAUGUAGCCAUGAAGCUGGCGCGGCGAAGCAUAAGA-AAAUAAAACU ..((((((....((((.(((((.....)))))))))......(((...(((((......)))))....))).((((......))))))))))..........-.......... ( -31.80) >consensus UAUGCUGCUUU__________AUGCUGCGGCGAGCAAACUAAACAAGAAUCCUGCGAAAAGGAUGCCAUGAGGACAUGAAGCUG_C_CGGCGAAGCAGAAGA_AAAAAAAACU ....(((((((............(((((.....)))............(((((......)))))))((((....)))).............)))))))............... (-12.72 = -14.20 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:46 2006