Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,178,812 – 19,178,919 |
Length | 107 |
Max. P | 0.805023 |
Location | 19,178,812 – 19,178,919 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 76.74 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -10.95 |
Energy contribution | -14.17 |
Covariance contribution | 3.22 |
Combinations/Pair | 1.24 |
Mean z-score | -2.47 |
Structure conservation index | 0.38 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19178812 107 + 20766785 CCGCAGAAUUUUAAUUUC-CCCCAAACUUUUGCCAGGCAACUUUGCUUGCAGAAUGCC---UGCGAAGGUAUGCGGGGCUCCCAAAGCUUCA-AUAUGGAUUUGAAAUUCCC .....(((((((((.(((-(((((.((((((((.(((((..((((....)))).))))---))))))))).)).)))(((.....)))....-....))).))))))))).. ( -35.80) >DroSec_CAF1 62489 105 + 1 CCGCAGAAUUUUAAUUUC-CCCCAAACUUUGGCCAGGCAACUUUGCCUGCAGAAUGCC---UGCGAAGGUAUGCCGGGCUC-CAAAGCUCCA-AUAUGGAU-UGAAAUUCCC .....((((((((((((.-...........(((((((((....))))))....(((((---(....)))))))))(((((.-...))).)).-....))))-)))))))).. ( -32.70) >DroSim_CAF1 59610 105 + 1 CCGCAGAAUUUUAAUUUC-CCCCAAACUUUGGCCAGGCAACUUUGCCUGCAGAAUGCC---UGCGAAGGUAUGCCGGGCUC-CAAAGCUCCA-AUAUGGAU-UGAAAUUCCC .....((((((((((((.-...........(((((((((....))))))....(((((---(....)))))))))(((((.-...))).)).-....))))-)))))))).. ( -32.70) >DroEre_CAF1 70193 87 + 1 CCGCAGAAUUUUAAUUUC-CCCCAAACUUUUGCUGCGAAACUUUGCUUGCAGAAUG---------------------GCUC-CAAAGCUCCA-AUAUGGAC-UGAAAUUCCC .....((((((((...((-(.......((((((.((((....))))..)))))).(---------------------(((.-...))))...-....))).-)))))))).. ( -17.40) >DroYak_CAF1 70009 109 + 1 CCGCAGAAUUUUAAUUUC-CCCCAAACUUUUGCUGGGGGACUUUGCUUGCAGAGCGACUGCUGCAAAGGUAUGCCGAGCUC-CAAAGCUCCAAAUAUGGAU-UGAAAUUCCC .....(((((((((((((-(((((.........)))))))((((((..((((.....)))).))))))((((...(((((.-...)))))...)))).)))-)))))))).. ( -40.30) >DroAna_CAF1 74427 97 + 1 CCACAGAAUUUUAAUUUUGUCUUCAACUUUUCCAAAGCAUCUCAACUUUGCGAAGGCC---CAAAAAGGUAAGCU---------AAGCUCCA-UUAUGGAU-UUUG-UUCCC ..(((((((.........((((((........(((((........))))).))))))(---((.((.((..(((.---------..))))).-)).)))))-))))-).... ( -14.50) >consensus CCGCAGAAUUUUAAUUUC_CCCCAAACUUUUGCCAGGCAACUUUGCUUGCAGAAUGCC___UGCGAAGGUAUGCCGGGCUC_CAAAGCUCCA_AUAUGGAU_UGAAAUUCCC .....((((((((..................(((.((((.((((((................))))))...)))).))).........((((....))))..)))))))).. (-10.95 = -14.17 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:45 2006