| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,173,306 – 19,173,414 |
| Length | 108 |
| Max. P | 0.948682 |
| Location | 19,173,306 – 19,173,414 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.90 |
| Mean single sequence MFE | -50.43 |
| Consensus MFE | -29.11 |
| Energy contribution | -28.62 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19173306 108 + 20766785 AAAGGACGAGAGCCGCCUCUUCUGCAUCAAGCUGCGGCGCAGCCGCCUGCGCCGCUGCAGCUGUGGGGGCGUGACCUUGCAGCC---CCCCAGCGACGGGAAUGGCAGCAC--------- ...((.(....)))(((..((((((.....((.(((((((((....))))))))).)).((((.((((((((......)).)))---)))))))).)))))..))).....--------- ( -58.90) >DroVir_CAF1 83815 106 + 1 GAAGGAUGGCAGCCUUCUGUUCUGCAUCAAGUUGCGACGAAGCCGCAUGCGCCGCUGCAGCUGUGGCGCCGUUACACUGCAGAA---UCAG---AACGGGGAAGGCAGCACG-------- ........((.(((((((((((((..((.(((.(..(((..((((((.((((....)).))))))))..)))..))))...)).---.)))---)))..))))))).))...-------- ( -41.20) >DroPse_CAF1 67490 120 + 1 AAAGGAUGGCAGCCGGCUGUUCUGCAUCAAGCUGCGGCGCAGUCGUCUACGCCGCUGCAGCUGCGGCGGAGUCGCCCUCCAGCAGGGUGACGGCAACGGCAACGGCAGCACUGCGGGCAG ...........(((.((.((.((((.....(((((((((((((.((....)).))))).))))))))(..((((((((.....))))))))..)..((....)))))).)).)).))).. ( -59.30) >DroGri_CAF1 83008 106 + 1 GAAGGAUGGCAGCCUGUUAUUCUGCAUCAAGUUGCGACGCAGCCGCAUGCGCAGCUGCAGCUGUGGCGCCGUUACACUACAGAA---UCAG---AACGGCGACGGCAGCACU-------- ..((((((((.....))))))))(((......)))...(((((.((....)).))))).(((((.((((((((...........---....---))))))).).)))))...-------- ( -42.36) >DroMoj_CAF1 93463 106 + 1 GAAGGAUGGCAGCUUGCUGUUCUGCAUCAAGCUGCGGCGCAGUCGAAUGCGUCGCUGCAGCUGCGGCGCUGUCACGCUGCAGAA---UCAG---AACGGCGACGGCAGCACG-------- ........((.(((((((((((((......((.((((((((......)))))))).))..((((((((......))))))))..---.)))---)))))))..))).))...-------- ( -51.80) >DroAna_CAF1 68143 112 + 1 GAAGGAUGGCAGCCGACUCUUCUGCAUCAAGUUGCGUCGCAGUCGCCUGCGUCGCUGCAGCUGCGGGGGCGUAACCCCGCAGAC---UCCCAACGAUGGCAACGGCAGCACCGCG----- ...((...((((.(((((....((((......))))....))))).))))...(((((((((((((((......)))))))).)---)........((....))))))).))...----- ( -49.00) >consensus GAAGGAUGGCAGCCGGCUGUUCUGCAUCAAGCUGCGGCGCAGCCGCAUGCGCCGCUGCAGCUGCGGCGCCGUCACCCUGCAGAA___UCAC___AACGGCAACGGCAGCACG________ ..((((((((.....)))))))).......(((((...(((((.((....)).)))))..((((((.(......).))))))..............((....)))))))........... (-29.11 = -28.62 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:44 2006