Locus 6091

Sequence ID 2R_DroMel_CAF1
Location 19,165,974 – 19,166,064
Length 90
Max. P 0.507571
window9759

overview

Window 9

Location 19,165,974 – 19,166,064
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 84.17
Mean single sequence MFE -32.92
Consensus MFE -24.35
Energy contribution -25.49
Covariance contribution 1.14
Combinations/Pair 1.11
Mean z-score -1.68
Structure conservation index 0.74
SVM decision value -0.05
SVM RNA-class probability 0.507571
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19165974 90 + 20766785
AGCUGGAUUCUGGUUGCGUGCAGACUCC------------AUCUGGAGUGUAAGCACUUGCCGGGGGCUCGGCGAACGAAGGAAAAGCCGUUAAUGUAACGG
.(((((.(((((((...(((((.(((((------------....))))).)..))))..)))))))..)))))...(....).....((((((...)))))) ( -32.40)
>DroSec_CAF1 49704 90 + 1
AGCUGGAUUCUGGUUGCGUGCAGACUCC------------AUCUGGAGUGUAAGCACUUGCCGGGGGCUCGGCGAACGAAGGAAAAGCCGUUAAUGUAACGG
.(((((.(((((((...(((((.(((((------------....))))).)..))))..)))))))..)))))...(....).....((((((...)))))) ( -32.40)
>DroSim_CAF1 51703 90 + 1
AGCUGGAUUCUGGUUGCGUGCAGACUCC------------AUCUGGAGUGAAAGCACUUGCCGGGGGCUCGGCGAACGAAGGAAAAGCCGUUAAUGUAACGG
.(((((.(((((((...((((..(((((------------....)))))....))))..)))))))..)))))...(....).....((((((...)))))) ( -31.60)
>DroEre_CAF1 57579 88 + 1
AGCUGGAUUCUGGCUGCGUGCAGACUCC------------AUCUGGAGUGU-AGCACUUGCCGGGGGCUCAGCGAGCGAAG-GAAAGCCGUUAAUGUAACGG
.(((((.(((((((...(((((.(((((------------....))))).)-.))))..)))))))..)))))........-.....((((((...)))))) ( -36.20)
>DroYak_CAF1 56732 102 + 1
AGCUGGAUUCUGGCUGCGUGCAGACUCCAUCUCCAUCUCCAUCUGGAGUGUGAGCACUAGCCGGGGGCCAAGCGAGCGAAGCGAAAGCCGUUGAUGUAAGGG
.(((((.(((((((((.((((....((((.(((((........))))))).))))))))))))))).)).))).((((..((....)))))).......... ( -38.40)
>DroAna_CAF1 58996 75 + 1
AGCUGGAU------UGCGUGCAGACUCC------------AUCUGGAGUGUAAGCAAUUGCCUGGGGCUCGGC---------AAAAGCCGUUAAUGGAACGG
.(((((((------(((.(((..(((((------------....)))))))).))))))(((...))).))))---------.....(((((.....))))) ( -26.50)
>consensus
AGCUGGAUUCUGGUUGCGUGCAGACUCC____________AUCUGGAGUGUAAGCACUUGCCGGGGGCUCGGCGAACGAAGGAAAAGCCGUUAAUGUAACGG
.(((((.(((((((...(((((.(((((................))))).)..))))..)))))))..)))))..............(((((.....))))) (-24.35 = -25.49 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:35 2006