| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,101,030 – 3,101,138 |
| Length | 108 |
| Max. P | 0.811730 |
| Location | 3,101,030 – 3,101,138 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 70.67 |
| Mean single sequence MFE | -17.93 |
| Consensus MFE | -10.73 |
| Energy contribution | -11.37 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3101030 108 + 20766785 CCCACAAUCUAGACAUAUUCUAGACAUUCUAUUAGCU-----CCUGGUUCUCACCAUGUUACUGGCCAUACGCUUCUUGAGCCACUUGGCCCGUUUCCUGGCCCCGCUGUUCA .......((((((.....))))))........((((.-----...((......(((.(..((.(((((...((((...))))....))))).))..).)))))..)))).... ( -23.70) >DroGri_CAF1 17347 84 + 1 ------------AAA-AAUC-----UGUCUA-----U-----A-AGCCGCUUACCAUAUUGCUGACCAUGCGCUUCUUCAGCCAUUUGGCCCGUUUGCGCGCCCCCCUGCUCA ------------...-....-----......-----.-----.-.(((((...(((.((.(((((............))))).)).))).......))).))........... ( -13.30) >DroSec_CAF1 15659 101 + 1 CCUACUAUCUAUACAUAAU-------UUCUAUCAGCU-----CCUGGCUCUUACCAUGUUACUGGCCAUACGCUUCUUCAGCCACUUGGCCCGUUUCCUGGCCCCGCUGUUCA ...................-------......((((.-----...(((......((.(..((.(((((...(((.....)))....))))).))..).)))))..)))).... ( -19.50) >DroSim_CAF1 22376 101 + 1 CCUACAAUCUAUACAUAUU-------UUCUAUUAGCU-----CCACGGUCUCACCAUGUUGCUGGCCAUACGCUUCUUCAGCCACUUCGCCCGUUUCCUGGCCCCGCUGUUCA ...................-------...........-----..(((((....(((.(..((.(((.....(((.....)))......))).))..).)))....)))))... ( -14.80) >DroEre_CAF1 15855 93 + 1 C-------------GCUUU-------UUCUACAAUAUUUGCUCCUAGCUCUCACCAUGUUACUGGCCAUACGCUUCCUCAGCCACUUGGCCCGUUUCCUGGCCCCGCUAGUCA .-------------.....-------.................(((((.....(((.(..((.(((((...(((.....)))....))))).))..).)))....)))))... ( -22.10) >DroYak_CAF1 15826 101 + 1 CGUAAUAUAUUUACAUCUC-------UUCCAUAAUAU-----GCUAGAUCUCACCAUGUUGCUGGCCAUUCGCUUUUUCAGCCACUUGCUCCGUUUCCUGGCUCCGCUAGUCA .((((.....)))).....-------...........-----(((((......(((.(..((.(((.....(((.....))).....)).).))..).))).....))))).. ( -14.20) >consensus CCUAC_AUCUAUACAUAUU_______UUCUAUAAGCU_____CCUGGCUCUCACCAUGUUACUGGCCAUACGCUUCUUCAGCCACUUGGCCCGUUUCCUGGCCCCGCUGUUCA .....................................................(((.(..((.(((((...(((.....)))....))))).))..).)))............ (-10.73 = -11.37 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:45 2006