Locus 6089

Sequence ID 2R_DroMel_CAF1
Location 19,160,329 – 19,160,443
Length 114
Max. P 0.712442
window9756

overview

Window 6

Location 19,160,329 – 19,160,443
Length 114
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 94.59
Mean single sequence MFE -41.36
Consensus MFE -38.76
Energy contribution -38.64
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.16
Structure conservation index 0.94
SVM decision value 0.38
SVM RNA-class probability 0.712442
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19160329 114 - 20766785
UGUGGAUUCAGGUAGAAGUUGGCGGGAAAGCCGGGCGGAAGGAGGCCACUGCCCACGCGCUUCGCUGGAGGUGGCUGGUCCACAAAUCUGGAUGAAGAAACCAAUUUGGUUAGC-
.....((((((((.....(((((......)))))(.(((....(((((((..(((.(((...)))))).)))))))..))).)..)))))))).....((((.....))))...- ( -39.70)
>DroSec_CAF1 44080 114 - 1
UGUGGAUUCAGGUAAAAGUUGGCGGGAAAGCCGGGCGGAAGGAGGCCACUGCCCACGCGCUUCGCUGGAGGCGGCUGGUCCACAAAUCUGGAUGAAGAAGACAAUUUGGUUAGU-
(((((((.(((......((.(((((....(((...(....)..)))..))))).)).((((((....)))))).))))))))))...(..(((..........)))..).....- ( -38.90)
>DroSim_CAF1 45124 114 - 1
UGUGGAUUCAGGUAAAAGUUGGCGGGAAAGCCGGGCGGAAGGAGGCCACUGCCCACGCGCUUCGCUGGAGGCGGCUGGUCCACAAAUCUGGAUGAAGAAGCCAAUUUGGUUAGU-
(((((((.(((......((.(((((....(((...(....)..)))..))))).)).((((((....)))))).))))))))))..(((......)))((((.....))))...- ( -41.60)
>DroEre_CAF1 52110 115 - 1
UGUGGAUUCAGAUAGAAGUUGGCGGGAAAGCCGGGCGGAAGGAGGCCGCUGCCCACGCGCUUCGCUGGAGGCGGCUGGUCCACAAACCUGGUUGAGUAAGCCAAUUUGGUUAGUA
(((((((.(((.........(((......)))((((((..((...)).))))))...((((((....)))))).))))))))))((((..((((.(....)))))..)))).... ( -44.20)
>DroYak_CAF1 51074 115 - 1
UGUGGAUUCAGGUAGAAGUUGGCGGGAAAGCCGGGCGGAAGGAGGCCACUGCCCACGCGCUUCGCUGGAGGCGGCUGGUCCACAAAUCUGGUUGAAAAAGCCAAUUCGGUUAGUU
......(((((.((((..(((..(((..((((((((((..((...)).))))))....(((((....)))))))))..))).))).)))).)))))..((((.....)))).... ( -42.40)
>consensus
UGUGGAUUCAGGUAGAAGUUGGCGGGAAAGCCGGGCGGAAGGAGGCCACUGCCCACGCGCUUCGCUGGAGGCGGCUGGUCCACAAAUCUGGAUGAAGAAGCCAAUUUGGUUAGU_
(((((((.(((......((.(((((....(((...(....)..)))..))))).)).((((((....)))))).))))))))))..............((((.....)))).... (-38.76 = -38.64 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:32 2006