Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,156,156 – 19,156,276 |
Length | 120 |
Max. P | 0.747149 |
Location | 19,156,156 – 19,156,276 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -26.03 |
Consensus MFE | -19.40 |
Energy contribution | -20.97 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.46 |
Structure conservation index | 0.75 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19156156 120 - 20766785 UCAUUUCAAGGCAAUGAAUACUAAUCAAAGUCACGAAUUUGCAUCUAACAAAUUUGUAAAUUUAAUUACAGUUGGACAUGAAGUACAAGAGUAAUUUUGAAAAAGAAUACUUUUGCAAGU ((((((((((((..(((.......)))..)))(((((((((.......)))))))))..............))))).))))....((((((((.((((....)))).))))))))..... ( -23.80) >DroSec_CAF1 39974 120 - 1 UCCUUCCCAGGCCAUGAUUACUAAUCAAAGCCAUGAAUUUGCAUCUAGCACAUUUUUAUAUUUAAUUAUAGUUGGUCAUGAACUGCAAAAGUAAUUUGGAAAAAGAAUACUUUUGCAAUA ........((..(((((((((((((.(((.....((((.(((.....))).)))).....))).))..))).))))))))..))(((((((((.(((......))).))))))))).... ( -25.80) >DroSim_CAF1 40107 120 - 1 UCCCUCCCAGGCCAUGAUUACUAAUCAAAGCCAUGAGUUUGCAUCUAGAAAAUUUGUAAAUUUAAUUAUAGUUGGUCAUGAACUGCAAAAGUAAUUUGGAAAAAGAAUACUUUUGCAAGA ......((((((..((((.....))))..))).((((((((((...........))))))))))........)))........((((((((((.(((......))).))))))))))... ( -28.50) >consensus UCCUUCCCAGGCCAUGAUUACUAAUCAAAGCCAUGAAUUUGCAUCUAGCAAAUUUGUAAAUUUAAUUAUAGUUGGUCAUGAACUGCAAAAGUAAUUUGGAAAAAGAAUACUUUUGCAAGA ......((((((..((((.....))))..)))((((((((((.....))))))))))...............)))........((((((((((.(((......))).))))))))))... (-19.40 = -20.97 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:28 2006