| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,150,315 – 19,150,421 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 19,150,315 – 19,150,421 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -31.85 |
| Consensus MFE | -25.14 |
| Energy contribution | -23.83 |
| Covariance contribution | -1.30 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19150315 106 - 20766785 CGUCGUGGGCAGCAUAUUGGCCCCGAAAGCAGCGGCAUGUGCUGCGGCAGCAUAGUCCUGUUCCUACGGGUAAAUACAGGUAUUUCCAAUAUA-AUACGGAUAUAAA ..(((.((((.........)))))))..((.(((((....))))).))........(((((.((....)).....)))))(((.(((......-....))).))).. ( -32.40) >DroGri_CAF1 51990 101 - 1 CGUUGUGGGCAGCAUGUUGGCGCCAAAGGCUGCGGCAUGUGCCGCCGCUGCAUAGUCCUGCUCCUGCAAGACAGAC-----GUAAACAAACGA-AUCCAGUAAUAAG .((((((((((((........(((...))).(((((....))))).)))))...(((.(((....))).)))...(-----((......))).-..))).))))... ( -33.90) >DroSec_CAF1 34175 106 - 1 CGUCGUGGGCAGCAUGUUGGCCCCGAAAGCAGCGGCAUGUGCUGCGGCAGCGUAGUCCUGUUCCUGCGGGUAAAUACAGGUAUUUCCAAUAUA-AUACGGAUAUAAA ..(((.((((.........)))))))..((.(((((....))))).))...(((..(((((....)))))....)))..(((((........)-))))......... ( -31.70) >DroSim_CAF1 34331 106 - 1 CGUCGUGGGCAGCAUGUUGGCCCCGAAAGCAGCGGCAUGUGCUGCGGCAGCGUAGUCCUGUUCCUGCGGGUAAAUCAAGGUAUUUCCAAUAUA-AUACGGAUAUAAA ..(((.((((.........)))))))..((.(((((....))))).))..((((..(((((....)))))........((.....))......-.))))........ ( -30.90) >DroWil_CAF1 59832 103 - 1 UGUUGUGGGCAGCAUAUUGGCCCCAAAGGCAGCCGCAUGAGCUGCCGCGGCAUAGUCCUGCUCCUACAA---AAUC-AAAUAUAAGGAAAAUACGUCCGGAUAUGUA ..(((((((.((((.(((((((.....((((((.......))))))..))).))))..)))))))))))---....-..((((..(((.......)))..))))... ( -33.50) >DroYak_CAF1 40839 105 - 1 CGUCGUGGGCAGCAUGUUGGCCCCGAAAGCAGCGGCAUGUGCUGCGGCAGCGUAGUCCUGUUCCUGCGAUUAAA-AAAGGUAUUUAAAUUAUA-AUAAGGAUAUUAA .((((..((.((((....(((..((...((.(((((....))))).))..))..))).))))))..))))....-...(((((((........-....))))))).. ( -28.70) >consensus CGUCGUGGGCAGCAUGUUGGCCCCGAAAGCAGCGGCAUGUGCUGCGGCAGCAUAGUCCUGUUCCUGCGAGUAAAUA_AGGUAUUUCCAAUAUA_AUACGGAUAUAAA ..(((((((.((((..(((....)))..((.(((((....))))).))..........)))))))))))...................................... (-25.14 = -23.83 + -1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:26 2006