Locus 6085

Sequence ID 2R_DroMel_CAF1
Location 19,148,974 – 19,149,075
Length 101
Max. P 0.953017
window9751

overview

Window 1

Location 19,148,974 – 19,149,075
Length 101
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.57
Mean single sequence MFE -26.42
Consensus MFE -20.17
Energy contribution -20.33
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.81
Structure conservation index 0.76
SVM decision value 1.43
SVM RNA-class probability 0.953017
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19148974 101 + 20766785
CCCCCGGCUCCUCCAGCACCUCCAGC---------UC----CUCCGUUGGCUGUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
.....((.....)).(((.....(((---------.(----.((.((.((((((((.(((((((........))))))).)))))))))).)).).))).....)))....... ( -26.10)
>DroSec_CAF1 32819 101 + 1
CCUCCAGCUCCUCCAGCUCCGCUAGC---------UC----CUCCGAUGGCUGUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
.....((((.....))))..((.(((---------.(----.((.(.(((((((((.(((((((........))))))).)))))))))).)).).)))......))....... ( -25.80)
>DroEre_CAF1 40981 101 + 1
CCUCCGGCUCCUCCUGCUCCUCCAGC---------UC----ACCCGAUGGCUGUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
..............(((......(((---------.(----(.(.(.(((((((((.(((((((........))))))).)))))))))).).)).)))......)))...... ( -25.00)
>DroWil_CAF1 58665 111 + 1
GCUGUUGCUCUUU---CUCUUCUGGCCAGUGGACCUCUUGGGGCUCUUGGCUGUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
((....)).....---....(((((((...((....))...)))...(((((((((.(((((((........))))))).)))))))))))))...((.......))....... ( -30.00)
>DroYak_CAF1 39511 97 + 1
----UGGCUCUUCCUGCUCCUCCGGC---------UG----CAUCGUUGGCUGUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
----..........(((......(((---------.(----((((..(((((((((.(((((((........))))))).)))))))))..))))))))......)))...... ( -31.90)
>DroAna_CAF1 42200 91 + 1
--------ACCCCCU--UGUGUCUGC---------CC----CACCAAUGGCUAUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
--------.......--.(((((((.---------..----......(((((.(((.(((((((........))))))).))).))))))))))))((.......))....... ( -19.70)
>consensus
CCUCCGGCUCCUCCUGCUCCUCCAGC_________UC____CACCGAUGGCUGUGUUUAAAUUGAAAAUUCCCGAUUUGCACACAGUCACAGAUGCGCUUAAUUUGCACCUCUC
...............................................(((((((((.(((((((........))))))).))))))))).(((.(.((.......)).).))). (-20.17 = -20.33 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:25 2006