Locus 6084

Sequence ID 2R_DroMel_CAF1
Location 19,148,767 – 19,148,860
Length 93
Max. P 0.518137
window9750

overview

Window 0

Location 19,148,767 – 19,148,860
Length 93
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 81.71
Mean single sequence MFE -31.08
Consensus MFE -20.35
Energy contribution -20.13
Covariance contribution -0.22
Combinations/Pair 1.35
Mean z-score -1.48
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.518137
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19148767 93 - 20766785
----------UUGGUGGUGCAGCACUGGUGUUG--------GUACUUCAAGUGUUGGUGUCGCUGUGGCAUAAUCAUAAGUGCAACCAAAACCAAGGCAUAGACAAUGCCU
----------((((((((.(((((....)))))--------((((((...(((...(((((.....)))))...))))))))).)))...)))))(((((.....))))). ( -29.20)
>DroSec_CAF1 32612 93 - 1
----------UUGGUGGUGCAGCACUGGUGUUG--------GUGCUUCAAGUGCUGGUGUCGCUGUGGCAUAAUCAUAAGUGCAACCAAAACCAAGGCAUAGACAAUGCCU
----------((((((((...(((((.(((...--------(((((...(((((....).))))..)))))...))).))))).)))...)))))(((((.....))))). ( -34.30)
>DroSim_CAF1 32783 93 - 1
----------UUGGUGGUGCAGCACUGGUGUUG--------GGGCUUCAAGUGCUGGUGUCGCUGUGGCAUAAUCAUAAGUGCAACCAAAACCAAGGCAUAGACAAUGCCU
----------((((((((...(((((.(((...--------..(((...(((((....).))))..))).....))).))))).)))...)))))(((((.....))))). ( -31.00)
>DroEre_CAF1 40765 100 - 1
----------UUGGUGGUGCAGCACUGGUGUGGAGCACU-GGCACUUGAAGUGCUGGUGUCGCUGUGGCAUAAUCAUAAGUGCAACCAAAACCAAGGCAUAGACAAUGGCU
----------((((((((...(((((..(((((.((((.-.((((.....))))..)))).((....))....)))))))))).)))...)))))(.(((.....))).). ( -34.20)
>DroYak_CAF1 39282 100 - 1
----------UCGAUGGUGCAGCACUGGUGUUG-GUACUCGAGGUUUGAGGUGCUGGUGUCGCUGUGGCAUAAUCAUAAGUGCAACCAAAACCAAGGCAUAGACAAUGGCU
----------....((((...(((((((..(..-((((((((...)))).))))..)..))((....)).........))))).))))......((.(((.....))).)) ( -27.00)
>DroPer_CAF1 41957 101 - 1
GUGGCAAGUGUUGUUGCUGU--UUCUGUUGCUG--------GUGCUGGUGCUGGUGGUGUCGCUUGGGUGUAAUCAUAAACGCAACCAAAACCAAGGCAUAGACAAUGCCU
..(((((((......)))((--((.((((..((--------((..((((((..(((((..(((....)))..)))))....)).))))..)))).)))).))))..)))). ( -30.80)
>consensus
__________UUGGUGGUGCAGCACUGGUGUUG________GUGCUUCAAGUGCUGGUGUCGCUGUGGCAUAAUCAUAAGUGCAACCAAAACCAAGGCAUAGACAAUGCCU
..............((((((.((((..(..((.................))..)..)))).))....((((........)))).))))......((((((.....)))))) (-20.35 = -20.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:25 2006