Locus 6082

Sequence ID 2R_DroMel_CAF1
Location 19,140,571 – 19,140,661
Length 90
Max. P 0.885655
window9747

overview

Window 7

Location 19,140,571 – 19,140,661
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 86.46
Mean single sequence MFE -21.90
Consensus MFE -15.52
Energy contribution -15.96
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -2.38
Structure conservation index 0.71
SVM decision value 0.94
SVM RNA-class probability 0.885655
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19140571 90 - 20766785
UCCUUAGCUGAAGUUUAAUUGGCACAGCACACUUUUGUUGUGUUGUUUUUAGCUUCUAUAUGGCAUUACUU-UGCGGCCAGCAUUUGAUUU
......(((((((((....((((((((((......)))))))))).....)))))).....(((.......-....))))))......... ( -22.40)
>DroSec_CAF1 24512 89 - 1
UCCUUAGCUGGUGUUUAAUUGGCACAGCACACUUUUGUUGUGUUGUUUUUAGCUUCUAUAUGGCAUUACUU-UGCGGCCAGCAUUUGAUU-
......(((((((((....((((((((((......)))))))))).....))).........(((......-))).))))))........- ( -24.70)
>DroSim_CAF1 25071 89 - 1
UCCUUAGCUGGUGUUUAAUUGGCACAGCACACUUUUGUUGUGUUGUUUUUAGCUUCUAUAUGGCAUUACUU-UGCGGCCAGCAUUUGAUU-
......(((((((((....((((((((((......)))))))))).....))).........(((......-))).))))))........- ( -24.70)
>DroEre_CAF1 32566 90 - 1
UCCUUAGCUGAUGUUUAAUUGGCACAGCACACUUUUGUUGUGUUGUUUUUAGCUUCUAUAUGGCAUUACUU-UGCGGCCAGCAUUUGGUUU
.....(((..((((.....(((((((((((((....).))))))))................(((......-))).))))))).)..))). ( -20.60)
>DroAna_CAF1 33820 84 - 1
UCCUCUUUAGUUACUUAGUUAGCACAGCACACUUUUGUUGUGU----UUUAGCUUCUUAUCGGCAUUGCUUUUAUGGCCAGCAUCGGA---
(((......(......(((((((((((((......))))))))----..)))))......).((...(((.....)))..))...)))--- ( -17.10)
>consensus
UCCUUAGCUGAUGUUUAAUUGGCACAGCACACUUUUGUUGUGUUGUUUUUAGCUUCUAUAUGGCAUUACUU_UGCGGCCAGCAUUUGAUU_
......((((..........(((((((((......))))))))).......(((.......)))..............))))......... (-15.52 = -15.96 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:22 2006