Locus 6081

Sequence ID 2R_DroMel_CAF1
Location 19,138,910 – 19,139,006
Length 96
Max. P 0.782088
window9746

overview

Window 6

Location 19,138,910 – 19,139,006
Length 96
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.62
Mean single sequence MFE -19.94
Consensus MFE -13.57
Energy contribution -13.77
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.68
SVM decision value 0.56
SVM RNA-class probability 0.782088
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19138910 96 + 20766785
UCGCGGCUUGUUUGUUUCACAGACAAGUCGGCCAAAAUUGAUAUACUCAGCUGCACACAGGA---AAAUCAGUUCAAAAUAUAACUUACUUUACACACA---------------
...(((((((((((.....))))))))))).....(((((((....((..(((....)))))---..))))))).........................--------------- ( -18.80)
>DroSec_CAF1 22867 96 + 1
UCGCGGCUUGUUUGUUUCACAGACAAGUCGGCCAAAAUUGAUAUACUCAGCUGCACACAGGA---AAAUCAGUUCAAACUACAACUUACUUUGCAAAUA---------------
..((((((((((((.....))))))))))......(((((((....((..(((....)))))---..)))))))..................)).....--------------- ( -19.40)
>DroSim_CAF1 22958 96 + 1
UCGCGGCUUGUUUGUUUCACAGACAAGUCGGCCAAAAUUGAUAUACUCAGCUGCACACAGGA---AAAUCAGUUCAAAACGUAACUUACUUUACAAAUA---------------
...(((((((((((.....))))))))))).....(((((((....((..(((....)))))---..)))))))......((((......)))).....--------------- ( -20.00)
>DroEre_CAF1 27474 94 + 1
UCGCGGCUUGUUUGUUUCACAGACAAGUCGGCCAAAAUUGAUAUACUCGACUGCACACAGGA---AAAUCAGUUUCAAA--AAGCUUGCUUCACAAUUA---------------
...(((((((((((.....))))))))))).....(((((..........(((....)))((---(....(((((....--)))))...))).))))).--------------- ( -21.10)
>DroYak_CAF1 28935 94 + 1
UCGCGGCUUGUUUGUUUCACAGACAAGUCGACCAAAAUUGAUAUACUCAGCUGCACACAGGA---AAAUCUGCUUAAAA--UAGGUUGCUUUUCAAAUU---------------
..((((((((((((.....)))))))(((((......))))).......)))))......((---(((.(.(((((...--))))).).))))).....--------------- ( -21.60)
>DroAna_CAF1 31431 104 + 1
UUGCUGCUUGUUUGUUUCCCGGACAACUCGGCGAAAAUUGAUAUUC-CGCCUGCAGAGAAAAUAAAAAUGUG--UAAAA--AU----G-UUUUUAAAUAAAAUUAAACAGGUUA
...(((((((((((.....)))))))...((((.............-)))).))))......(((((((((.--.....--))----)-))))))................... ( -18.72)
>consensus
UCGCGGCUUGUUUGUUUCACAGACAAGUCGGCCAAAAUUGAUAUACUCAGCUGCACACAGGA___AAAUCAGUUCAAAA__UAACUUACUUUACAAAUA_______________
...(((((((((((.....))))))))))).................................................................................... (-13.57 = -13.77 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:20 2006