Locus 6079

Sequence ID 2R_DroMel_CAF1
Location 19,133,181 – 19,133,276
Length 95
Max. P 0.789608
window9743

overview

Window 3

Location 19,133,181 – 19,133,276
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 70.96
Mean single sequence MFE -35.58
Consensus MFE -13.38
Energy contribution -14.52
Covariance contribution 1.14
Combinations/Pair 1.24
Mean z-score -1.99
Structure conservation index 0.38
SVM decision value 0.58
SVM RNA-class probability 0.789608
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19133181 95 - 20766785
----GCU-GCC-GGUGAGAGUUUCGGUGCUGUGCUCGACCCAUGGCGAUGGGUUGGACAGCAGCCAAUUGCUCUGGCGGCUGAGGCUGAUCGAUUGCAAAU
----..(-((.-..(((.((((((((((((((.(.((((((((....)))))))))))))).((((.......)))).)))))))))..)))...)))... ( -40.60)
>DroSec_CAF1 17339 92 - 1
----GCU-GCC-GGUGAGAGCUU-GGAGCU--GCUCGACCCAUGGCGAUGGGUUGGACAGCAGCCAAUUGCUCUUGCGGCUGAGGCUGAUCGAUUGCAAAU
----(((-(((-.(..(((((((-((.(((--(..((((((((....))))))))..))))..))))..)))))..))))...)))............... ( -42.00)
>DroSim_CAF1 17416 92 - 1
----GCU-GCC-GGUGAGAGCUU-GGAGCU--GCUCGACCCAUGGCGAUGGGUUGGACAGCAGCCAAUUGCUCUGGCGGCUGAGGCUGAUCGAUUGCAAAU
----(((-(((-....(((((((-((.(((--(..((((((((....))))))))..))))..))))..)))))))))))....((.........)).... ( -41.20)
>DroEre_CAF1 22075 88 - 1
GGCUGCUGGCU-GGUGAGAGUUU------------CGCCCAAUGCCGAUGGGUUGGACAGCAGCCAAUUGCUCUGGCGGCUGAGGCUGAUCGAUUGCAAAU
((((((((...-((((((...))------------)))).....((((....)))).))))))))..((((..(((((((....)))).)))...)))).. ( -33.90)
>DroAna_CAF1 25460 84 - 1
----GUU-GUUGGGUGAGAGUUUUAAAGCU--GAUC----------GGUGGGCUGGACAGCAGCCCAUCGCUCUUGGCUCUGAUGCUGAUCGAUUGCAAAU
----.((-((....(((.(((.(((.((((--((.(----------(((((((((.....)))))))))).))..)))).))).)))..)))...)))).. ( -31.70)
>DroPer_CAF1 25667 79 - 1
----CGA-CUGGGGCUCGAGU-----AGGU--GA----------GCGUCGGGUUAGCUGCUGGACCAUAGCUCUUCCGCCUCAUGCUGAUCGAUUGCAAAU
----...-.....((((((.(-----((((--((----------(.(.((((..(((((........)))))..)))))))))).))).))))..)).... ( -24.10)
>consensus
____GCU_GCC_GGUGAGAGUUU_GGAGCU__GCUCGACCCAUGGCGAUGGGUUGGACAGCAGCCAAUUGCUCUGGCGGCUGAGGCUGAUCGAUUGCAAAU
............................................(((((.((((((.(..(((((............)))))..))))))).))))).... (-13.38 = -14.52 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:18 2006