| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,122,935 – 19,123,036 |
| Length | 101 |
| Max. P | 0.744598 |
| Location | 19,122,935 – 19,123,036 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 70.12 |
| Mean single sequence MFE | -22.19 |
| Consensus MFE | -8.69 |
| Energy contribution | -10.22 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19122935 101 - 20766785 UUUAGG-------UUUCACUA---CCAACCUCAGCAUCUGAGGUGUUCUGAUAAUUGGCGGAAAUAUUAGGCAAACAGGUAUGACUGUCAUAUUUAUUCGAACUUAUAAUU ....((-------(......)---)).(((((((...)))))))((((.(((((.((((((..((((..(.....)..))))..))))))...))))).))))........ ( -28.20) >DroPse_CAF1 15169 96 - 1 ------UCACGUUAGUCACCAUUUUUAACGCCGGGCUCUUAAUUGUUCUGAUAAUUAAGUUUAAUGGUUGUUAAAUACGCAUCACUGUCUUGUUUUUCUUUC--------- ------..(((.((((.......((((((((((....(((((((((....))))))))).....))).)))))))........))))...))).........--------- ( -15.66) >DroSec_CAF1 7060 100 - 1 UGUAGG-------U-AGACUA---CCAACCUCAGCAUCUGAGGUGUUCUGAUAAUUGGCGGAAAUAUUAGGCAAAUAGGUAUGACUGUAAUAUUUAUUCUAACUUAUAAUU ((((((-------(-(((...---((.(((((((...))))))).(((((........)))))......))...((((((((.......))))))))))).)))))))... ( -22.70) >DroSim_CAF1 7086 100 - 1 UUUAGG-------U-AAACUA---CCAACCUCAGCAUCUGAGGUGUUCUGAUAAUUGGCGGAAAUAUUAGGCAAAUAGGUAUGACUGUCAUAUUUAUUCUAACUUAUAAUU ..((((-------(-......---((.(((((((...))))))).(((((........)))))......))..((((((((((.....))))))))))...)))))..... ( -22.60) >DroEre_CAF1 11811 107 - 1 UUGAAAUCCGCUUUUUCAUUAACUUUAACCUCAGCAUCUGAGGUGUUCUGAUAAUUGGCGGAAAUAUUAGGCAAA----UAUGACUGUCAUACUUAUACUUCAUUUUAAUU .((((.((((((..((.((((......(((((((...)))))))....))))))..)))))).......((((..----......))))..........))))........ ( -24.30) >DroYak_CAF1 12412 107 - 1 UUAAAAACCACUUUUUCAUUAACUCUAACCUCAGCUUCUGAGGUGUUCUGAUAAUUGGCGGAAAUAUUAGGCAAA----UAUGACUGUCAUAUUUAUACUUAUUUUUAAUU (((((((....................(((((((...)))))))((...((((..((((((..(((((.....))----)))..))))))))))...))...))))))).. ( -19.70) >consensus UUUAGG_______UUUCACUA___CCAACCUCAGCAUCUGAGGUGUUCUGAUAAUUGGCGGAAAUAUUAGGCAAAUAGGUAUGACUGUCAUAUUUAUUCUAACUUAUAAUU ...........................(((((((...))))))).....(((((.((((((..(((.............)))..))))))...)))))............. ( -8.69 = -10.22 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:11 2006