| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,118,255 – 19,118,376 |
| Length | 121 |
| Max. P | 0.770683 |
| Location | 19,118,255 – 19,118,345 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 66.67 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -10.02 |
| Energy contribution | -10.22 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19118255 90 + 20766785 GCCAU-------AACACACAUUGGCAUUGCCACAGAAAA-----CGGUGGAGAAAAUAGCACUGCUGGUUCAUUUGCGUUUUGGCCCUUGGCCAACGGCAAA ((((.-------.........)))).(((((....((((-----(.(..(((((..((((...)))).))).))..))))))((((...))))...))))). ( -27.30) >DroSec_CAF1 2497 90 + 1 GCCAU-------AACACACAUCGGCAUUUCCACAGAAAG-----CAGUGGAGAAAAUAGCACUGCUGCGGCAUUUGUGUUUUGGCCCUUGGCCAACAGCAAA ((...-------...(((((...((.(((((((......-----..))))))).....(((....))).))...))))).((((((...))))))..))... ( -27.50) >DroSim_CAF1 2518 90 + 1 GCCAU-------AACACACAUCGGCAUUUCCACAGAAAG-----CAGUGGAGAAAAUAGCACUGCUGGGACGUUUGCGUUUUGGCCCUUGGACAACUGCCAA .....-------..........(((((((((((......-----..)))))))..........((..(((((....)))))..))...........)))).. ( -25.50) >DroEre_CAF1 7314 96 + 1 GCUAAAGCAGCUAAAACACAUCGGUAUGUGCACAGAAUGUCCGCCGGUGGAGAAAAUAGCACCGAUGAG------GCCUCUUGGCCCAGGGCCAAGAGCAAA (((.....))).......(((((((....((......(.((((....)))).).....)))))))))..------((.((((((((...))))))))))... ( -30.60) >DroPer_CAF1 10013 81 + 1 GAAAU--------ACUCUUAUUUGCAAUUG--CAGAACCUGCACCCAUGGAGAAAACGGCA-----GAA------AACUAUUGGCCUGUGGCCAAGAGUAAU ....(--------((((((.(((((...((--(((...)))))((...))........)))-----)).------.......((((...))))))))))).. ( -22.00) >consensus GCCAU_______AACACACAUCGGCAUUUCCACAGAAAG_____CAGUGGAGAAAAUAGCACUGCUGAG_C_UUUGCGUUUUGGCCCUUGGCCAACAGCAAA .......................((...................(((((..........)))))................((((((...))))))..))... (-10.02 = -10.22 + 0.20)
| Location | 19,118,281 – 19,118,376 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 72.20 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -9.66 |
| Energy contribution | -8.91 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19118281 95 - 20766785 CAACUGUCAAUGAGUUGGCCAAACACAAACAUUUGCCGUUGGCCAAGGGCCAAAACGCAAAUGAACCAGCAGUGCUAUUUUCUCCACCG-----UUUUCU ..(((((...((.(((.....))).))..(((((((..((((((...))))))...))))))).....)))))................-----...... ( -23.40) >DroSec_CAF1 2523 92 - 1 -AACAGUCAAUGAGUUGGCCAAAC--AAACAUUUGCUGUUGGCCAAGGGCCAAAACACAAAUGCCGCAGCAGUGCUAUUUUCUCCACUG-----CUUUCU -....(((((....))))).....--...((((((.((((((((...)))))..)))))))))....(((((((..........)))))-----)).... ( -24.40) >DroSim_CAF1 2544 92 - 1 -AACUGUCAAUGAGUUGGCCAAAC--AAACAUUGGCAGUUGUCCAAGGGCCAAAACGCAAACGUCCCAGCAGUGCUAUUUUCUCCACUG-----CUUUCU -(((((((((((..(((......)--)).)))))))))))......(((.....(((....))))))(((((((..........)))))-----)).... ( -27.50) >DroEre_CAF1 7347 87 - 1 -AACUGUCAAUGAGUUGGCCAA------ACAUUUGCUCUUGGCCCUGGGCCAAGAGGC------CUCAUCGGUGCUAUUUUCUCCACCGGCGGACAUUCU -..(((((...((...((((((------....)))(((((((((...)))))))))))------)...))((((..........)))))))))....... ( -30.20) >DroYak_CAF1 7829 74 - 1 -AACUGUCAAUGAGUUGGCCAA------ACAUUUGCUCUUGGCCAAGGGCCAAAAGAC------CUCUGCAGUGCUAUUUUCUCCAC------------- -.(((((....(((((((((..------...((.((.....)).)).)))))).....------))).)))))..............------------- ( -16.00) >DroPer_CAF1 10036 82 - 1 -UUCUGUCAAUGAGUUGGCCAA------ACAAUUACUCUUGGCCACAGGCCAAUAGUU------UUC-----UGCCGUUUUCUCCAUGGGUGCAGGUUCU -.(((((..(((((.((((...------......(((.((((((...)))))).))).------...-----.))))....)).)))....))))).... ( -19.64) >consensus _AACUGUCAAUGAGUUGGCCAA______ACAUUUGCUCUUGGCCAAGGGCCAAAACGC______CUCAGCAGUGCUAUUUUCUCCACCG_____CUUUCU ...........(((.((((...............(.((((((((...)))))..))))...............))))....)))................ ( -9.66 = -8.91 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:10 2006