Locus 6072

Sequence ID 2R_DroMel_CAF1
Location 19,109,939 – 19,110,033
Length 94
Max. P 0.802412
window9726

overview

Window 6

Location 19,109,939 – 19,110,033
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 87.13
Mean single sequence MFE -24.44
Consensus MFE -19.40
Energy contribution -20.40
Covariance contribution 1.00
Combinations/Pair 1.21
Mean z-score -1.78
Structure conservation index 0.79
SVM decision value 0.62
SVM RNA-class probability 0.802412
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19109939 94 - 20766785
GUUUCGGGGGGCUUAUAAGAUUCUUACUUUUUUAAAGACAAGAGAUACCAUGUUUCUAUGGUAAGUACGUCCGCAAUGUGAGUUCCCUUAAAUC
((((.((((((((((((...(((((.(((.....)))..))))).(((((((....))))))).............)))))))))))).)))). ( -24.70)
>DroSec_CAF1 52378 94 - 1
GUUUCGGGGGGCUUAUAAGAUUCUUACUUUUUUAAAGACAAGAGAUACCAUGUUUCUAUGGUAAGUACGUCUGAAAUUUAAGUUCCCCUAAAUC
((((.((((((((((..((((.((((((....((.(((((.(......).))))).)).))))))...))))......)))))))))).)))). ( -25.80)
>DroSim_CAF1 53292 94 - 1
GUUUCGGGGGGCUUAUAAGAUUCUUACUUUUUUAAAGGCAAGAGAUACCAUGUUUCUAUGGUAAGUACGACCGCAAUGUGAGUUCCCUUAAAUC
((((.((((((((((((...(((((.((((....)))).))))).(((((((....))))))).............)))))))))))).)))). ( -27.20)
>DroEre_CAF1 48908 94 - 1
GUUUCGGGGGGCUUAUAAGAUUCUUACUCUUUUUAAGACGAGGGAUACCCUGUUUUCAUGGUAGGUACUUCCGCUGUGUGAAUUGCCCUUAAUC
......((((((......(((((...........(((((.((((...)))))))))((((((.((.....)))))))).))))))))))).... ( -22.00)
>DroYak_CAF1 66375 94 - 1
GUUUCGGGGGGCUUAUAAAAUCCUUACCUUUUUAAAGACAAGAGAAACCAUGUUUUUAUGGUAGGUACUUCCGCUGUGUGCAUUCCCUUCAAUC
.....((((((...........((((((....((((((((.(......).)))))))).)))))).......((.....))...)))))).... ( -22.50)
>consensus
GUUUCGGGGGGCUUAUAAGAUUCUUACUUUUUUAAAGACAAGAGAUACCAUGUUUCUAUGGUAAGUACGUCCGCAAUGUGAGUUCCCUUAAAUC
((((.((((((((((((.........(((((........))))).(((((((....))))))).............)))))))))))).)))). (-19.40 = -20.40 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:02 2006