Locus 6071

Sequence ID 2R_DroMel_CAF1
Location 19,108,029 – 19,108,132
Length 103
Max. P 0.560151
window9725

overview

Window 5

Location 19,108,029 – 19,108,132
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 94.82
Mean single sequence MFE -23.50
Consensus MFE -22.44
Energy contribution -22.33
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.95
SVM decision value 0.05
SVM RNA-class probability 0.560151
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19108029 103 + 20766785
AAUACUUACUUAGCAGGAAAUUCGUUUAAAUUAUUAUUCGACCUUGGGUGGAAAAUGUUUCUACCGUGGUAAAAGUUUCUAUGCCUUGGUAAAUUUCUGUGCA
.....(((((..((((((((((((..(((....)))..))(((...(((((((.....)))))))..)))...))))))).)))...)))))........... ( -22.10)
>DroSec_CAF1 50484 103 + 1
AAUACUUACUUGACAGGAAAUUUGUUUAAAAUAUUAUUCGACCUCGGGUGGAAAAUGUUUCUACCUUGGCAAAAGUUUCUAUGCCUUGGUAAAUUUCUGUGCA
............(((((((.........(((((((.(((.(((...))).)))))))))).((((..((((..........))))..))))..)))))))... ( -24.20)
>DroSim_CAF1 51375 103 + 1
AAUACUUACUUGACAGGAAGUUUGUUUAAAAUAUUAUUCGACCUCGGGUGGAAAAUGUUUCUACCUUGGCAAAAGUUUCUAUGCCUUGGUAAAUUUCUGUGCA
............(((((((.........(((((((.(((.(((...))).)))))))))).((((..((((..........))))..))))..)))))))... ( -24.20)
>consensus
AAUACUUACUUGACAGGAAAUUUGUUUAAAAUAUUAUUCGACCUCGGGUGGAAAAUGUUUCUACCUUGGCAAAAGUUUCUAUGCCUUGGUAAAUUUCUGUGCA
............(((((((.........(((((((.(((.(((...))).)))))))))).((((..((((..........))))..))))..)))))))... (-22.44 = -22.33 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:01 2006