Locus 6070

Sequence ID 2R_DroMel_CAF1
Location 19,106,211 – 19,106,307
Length 96
Max. P 0.828387
window9724

overview

Window 4

Location 19,106,211 – 19,106,307
Length 96
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.31
Mean single sequence MFE -33.00
Consensus MFE -18.84
Energy contribution -18.31
Covariance contribution -0.52
Combinations/Pair 1.39
Mean z-score -2.32
Structure conservation index 0.57
SVM decision value 0.71
SVM RNA-class probability 0.828387
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19106211 96 + 20766785
UAAAGCCUGUCA---ACUCGGUCACGUUCGCAGGCAGAGAGCGUGAUUGGGAAUCGACUAGAGUUAGCACUAGAGU--UAGUCUUAAGUUGAAAGCAGGAU
.....(((((..---.(((((((((((((.(.....).)))))))))))))..((((((.((((((((......))--))).))).))))))..))))).. ( -37.20)
>DroPse_CAF1 47336 98 + 1
UAACAGACGACU---CCAUGGCUCCGUUCGCAGGUAGAGGGCGUAGCUGGAGAUCGGCUAGAGUUAGAGAUAGUGUUUUACACCUAAGUUAGAAGCAGGAU
.......(((((---(((..(((.(((((.(.....).))))).)))))))).)))(((.((.((((.....(((.....))))))).))...)))..... ( -24.60)
>DroSec_CAF1 48676 96 + 1
UAAAGCCUGUCA---CCUCGGUCACGUUCGCAGGCAGAGAGCGUGACUGGGAAUCGACUAGAGUUAGCCCUAGAGU--UAGUCAUAAGUUGAAAGCAGGAU
.....(((((..---.(((((((((((((.(.....).)))))))))))))....((((((..(((....)))..)--)))))...........))))).. ( -35.70)
>DroEre_CAF1 45164 99 + 1
UAAAGCCUGUCACCACCGCGGUCACGUUCGCAGGCAGAGGGCGUGACUGGGAAUUGACUAGAGUUAGCCCUAGAGU--UAGUCCUAAGUUGGAAGCAGGAU
.....(((((..(((((.(((((((((((.(.....).)))))))))))))....((((((..(((....)))..)--)))))......)))..))))).. ( -36.90)
>DroYak_CAF1 62689 96 + 1
UAAAGCCUGUCA---CCGCAGUCACGUUCGCAGGCAGAGAGCGUGACUGGGAAUCGACUAGAGUUAGCCGUAGAGU--UAGUCUUAAGUUGAAAGCAGGAU
.....(((((..---((.(((((((((((.(.....).)))))))))))))..((((((.((((((((......))--))).))).))))))..))))).. ( -39.00)
>DroPer_CAF1 47512 98 + 1
UAACAGACGACU---CCAUGGCUCCGUUCGCAGGUAGAGGGCGUAGCUGGAGAUCGGCUAGAGUUAGAGAUAGUGUUUUACACCUAAGUUAGAAGCAGGAU
.......(((((---(((..(((.(((((.(.....).))))).)))))))).)))(((.((.((((.....(((.....))))))).))...)))..... ( -24.60)
>consensus
UAAAGCCUGUCA___CCACGGUCACGUUCGCAGGCAGAGAGCGUGACUGGGAAUCGACUAGAGUUAGCCCUAGAGU__UAGUCCUAAGUUGAAAGCAGGAU
.....((((.(.......(((((((((((.(.....).)))))))))))....((((((...........................))))))..))))).. (-18.84 = -18.31 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:00 2006