Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,094,533 – 3,094,638 |
Length | 105 |
Max. P | 0.720835 |
Location | 3,094,533 – 3,094,638 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 77.98 |
Mean single sequence MFE | -41.26 |
Consensus MFE | -29.64 |
Energy contribution | -29.64 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.52 |
Structure conservation index | 0.72 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3094533 105 - 20766785 CCGCUGCGAAAUCCUGCUGGCUGCAGCCAGUUCUGCAUCGGGAUCGGGAUCGGGACUGGAACUGGGAUCAGGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((.....((((((.(((((..(((((((((..((((..((((........))))..))))...))))))))).....)))).).))))))..)))))... ( -47.30) >DroSec_CAF1 9324 81 - 1 CCGCUGUGAGAUCCUGCUGGCUGCAGCCUGUUCUGCAUCGGG------AUCG------------------GGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((..(..((((((.(((((..(((((((((...))))------).))------------------))((......)))))).).))))))).)))))... ( -34.80) >DroSim_CAF1 14843 87 - 1 CCGCUGUGAGAUCCUGCUGGCUGCAGCCAGUUCUGCAUCGGGAUCGGGAUCG------------------GGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((..(..((((((.(((((..(((((((((.(((........)))))------------------))))))).....)))).).))))))).)))))... ( -38.30) >DroEre_CAF1 9523 99 - 1 CCGCUGCGAGAUCCUGCUGGCAGCAGCCAGUUCUGGAUCGGGAUUGG------AACUGGGACCGGGACCGGGGUUGGGAUGCGCAGACGAGCAGGCGGCAGUAAA ..(((((..(..((((((.((.(((.((((..((((.((((..((..------....))..))))..))))..))))..)))...).).))))))).)))))... ( -41.10) >DroYak_CAF1 9445 93 - 1 CCGCUGCGAGAUCCUGCUGGCUGCAGCCAGUUCUGGAUCGGGACUGG------AACUGCC------AUCGGGGUUGGGAUGCGCAGACGAGCAGGCGGCGGUGAA (((((((..(((((((.((((.....(((((((((...)))))))))------....)))------).)))))))....(((........))).))))))).... ( -44.80) >consensus CCGCUGCGAGAUCCUGCUGGCUGCAGCCAGUUCUGCAUCGGGAUCGG_AUCG__ACUG________A_C_GGGCUGGGAUGCGCAGACGAGCAGGCGGCAGCUAA ..(((((.....((((((.(((((..((.((((((...)))))).)).........................((......)))))).).))))))..)))))... (-29.64 = -29.64 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:43 2006