Locus 6069

Sequence ID 2R_DroMel_CAF1
Location 19,103,458 – 19,103,563
Length 105
Max. P 0.735992
window9723

overview

Window 3

Location 19,103,458 – 19,103,563
Length 105
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 77.28
Mean single sequence MFE -16.08
Consensus MFE -3.88
Energy contribution -4.60
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -1.88
Structure conservation index 0.24
SVM decision value 0.44
SVM RNA-class probability 0.735992
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19103458 105 - 20766785
CCCCCGUCUCGAAAUCAGACACAAAAAUUCCCUCAUAAUUUAGUAAUAAAAGAAUAUUAACUAAAUUGGGAAGAGCAUAGAAUUAUCAA------UAACCCUUUGCAGACA
.....((((..................(((((....((((((((((((......)))).)))))))))))))..(((.((..(((....------)))..)).))))))). ( -18.80)
>DroSec_CAF1 45952 101 - 1
CCCCCGU--CGAAAUCAGCCACA--AAUUCCCUCAUAAUUUAGUAAUAAAAGAACAUUAACUAAAUUGUGAAGACCCUAGAAUUAUCAA------UAGCCCCUUGCAGACA
.....((--(.............--.......(((((((((((((((........))).))))))))))))..................------..((.....)).))). ( -15.30)
>DroSim_CAF1 46818 101 - 1
CCCCCGU--CGAAAUCAGCCACA--AAUUCCCUCAUAAUUUAGUAAUAAAAGAACAUUAACUAAAUUGGAAAGACCCUAGAAUUAUCAA------UAGCCCCUUGCAGACA
.....((--(.............--(((((......(((((((((((........))).))))))))((......))..))))).....------..((.....)).))). ( -11.20)
>DroEre_CAF1 42441 92 - 1
CCCUCGC--CG-AAUCAAUCACA--AAUUCCCUCAUAAUUUAGUAAUAAA--AACAAUGACUAUAUUGUGAAAGUCCUAGAAAUAUGAAAUCCAAC------------AUA
.......--..-...........--.......(((((((.((((.((...--....)).)))).)))))))...((.((....)).))........------------... (  -8.00)
>DroYak_CAF1 59893 104 - 1
CCCCCGU--UG-AAUCGGGCGCA--AAUUCCCUCAUAGUUUAGUAAUAAA--AACAUUAACUAUGUUGGGAAGGCCCUGAAAUUAUCAAAUCAAAUAGCCCCAUGCAGACA
.....((--(.-.((.((((((.--..(((((.(((((((..((......--.))...)))))))..))))).))..(((.....))).........)))).))...))). ( -27.10)
>consensus
CCCCCGU__CGAAAUCAGCCACA__AAUUCCCUCAUAAUUUAGUAAUAAAAGAACAUUAACUAAAUUGGGAAGACCCUAGAAUUAUCAA______UAGCCCCUUGCAGACA
...........................(((((....(((((((((((........)))).))))))))))))....................................... ( -3.88 =  -4.60 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:59 2006