| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,094,684 – 19,094,784 |
| Length | 100 |
| Max. P | 0.649704 |
| Location | 19,094,684 – 19,094,784 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -19.67 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19094684 100 - 20766785 CAGCGCGAUUUAUGCCUAAAUGGUACGCGUUGAAGCAUAAGUUAUGCCAGCGAACG-GAAUG--AAAGUAUCUUACAGAUACAUAGC--------GACCAAGAACAAACUG (((((((.....((((.....)))))))))))..((.....((((.((.......)-).)))--)..(((((.....)))))...))--------................ ( -22.50) >DroSec_CAF1 37277 100 - 1 CAGCGCGAUUUAUGCCUAAAUGGUACGCGUUGAGGCAUAAGUUAUGCCAGCGAACG-GAAUG--AAAGUAUCUCACAGAUACAUAGC--------GACCAAGAACGAACUG ..(((..((((((((((.((((.....)))).))))))))))..)))........(-(....--...(((((.....))))).....--------..))............ ( -25.64) >DroSim_CAF1 38227 100 - 1 CAGCGCGAUUUAUGCCUAAAUGGUACGCGUUGAGGCAUAAGUUAUGCCAGCGAACG-GAAUG--AAAGUAUCUCACAGAUACAUAGC--------GACCAAGAACGAACUG ..(((..((((((((((.((((.....)))).))))))))))..)))........(-(....--...(((((.....))))).....--------..))............ ( -25.64) >DroEre_CAF1 33678 108 - 1 CAGCGCGAUUUAUGCCUAAAUGGUACGCGUUGAAGCAUAAGUUAUGCCAGCGAGCG-GAAUA--AAAGUAUCUCACAGAUACAUAGACACAUACAGACAAAGAACAAGCUG ((((((......((((.....))))..(((((..(((((...)))))))))).)).-.....--...(((((.....))))).........................)))) ( -23.90) >DroYak_CAF1 50786 108 - 1 CAGUGCGAUUUAUGCCUAAAUGGUACGCGUUGAAGCAUAAGUUAUGCCAGUGAACG-GAAUA--AAAGUAUCUCACAGAUGCAUAGCUACAUGCAGACAAAGAAUCAACUG ((((..(((((.((((.....))))...(((...((((.((((((((..((((((.-.....--...))...))))....))))))))..)))).)))...))))).)))) ( -26.80) >DroAna_CAF1 32472 90 - 1 CAGCGCGAUUUAUGCUUAAAUGGUACGCAUUCAAGCAUAAGUUAUGCCAUAGGAUGGGAAUAAAAAAGUAUCUCACAGAUACACAAA---------------------CAC ..(((..((((((((((.((((.....)))).))))))))))..)))....................(((((.....))))).....---------------------... ( -23.10) >consensus CAGCGCGAUUUAUGCCUAAAUGGUACGCGUUGAAGCAUAAGUUAUGCCAGCGAACG_GAAUA__AAAGUAUCUCACAGAUACAUAGC________GACCAAGAACAAACUG ..(((..((((((((...((((.....))))...))))))))..)))....................(((((.....)))))............................. (-19.67 = -19.25 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:55 2006