Locus 6063

Sequence ID 2R_DroMel_CAF1
Location 19,075,232 – 19,075,327
Length 95
Max. P 0.871477
window9715

overview

Window 5

Location 19,075,232 – 19,075,327
Length 95
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 81.43
Mean single sequence MFE -27.83
Consensus MFE -21.48
Energy contribution -21.37
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.97
Structure conservation index 0.77
SVM decision value 0.87
SVM RNA-class probability 0.871477
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19075232 95 - 20766785
GGUU-GGGGAGG-GAUGGGGUAUUCUUGGGCUGCACUUGGUGGCACUUGGUGGUGCGGGAAGUUGGAAGGUAGUCUUAUUUCAAUUUACAACCAAGU
((((-(..(((.-.(((((((((..((.((((.(((...)))(((((....)))))....)))).))..))).))))))..)..))..))))).... ( -28.80)
>DroSec_CAF1 17723 81 - 1
------GGGAGGCAGUGUGGUCUUCUUGGGCUGCACUU----------GGAGGUGCGGGGGGUGGGAAGGUAGUCUUAUUUCAAUUUACAACCAAGU
------.((((((......))))))((((.(((((((.----------...)))))))(..((((((......))))))..).........)))).. ( -27.30)
>DroSim_CAF1 17645 87 - 1
GGUUUGGGGAAGCAGUGGGGUCUUCUUGGGCUGCACUU----------GGAGGUGCGGGGGGUGGGAAGGUAGUCUUAUUUCAAUUUACAACCAAGU
((((..((((..(......)..))))..))))..((((----------((..(((...(..((((((......))))))..)....)))..)))))) ( -27.40)
>consensus
GGUU_GGGGAGGCAGUGGGGUCUUCUUGGGCUGCACUU__________GGAGGUGCGGGGGGUGGGAAGGUAGUCUUAUUUCAAUUUACAACCAAGU
........................(((((.(((((((..............)))))))(((((((((......))))))))).........))))). (-21.48 = -21.37 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:41 2006