| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,069,093 – 19,069,190 |
| Length | 97 |
| Max. P | 0.965921 |
| Location | 19,069,093 – 19,069,190 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Mean single sequence MFE | -38.60 |
| Consensus MFE | -28.20 |
| Energy contribution | -27.07 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.965921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19069093 97 + 20766785 -------------------GAAAAUCUGGUCGAGCGCAAGCACCAUCGAUUGGCCCGUUCGGAGCGUUCAGGCAUCUCGGACAGAGAUGCCAAGCCGACAGCCAGGUAAACCGUAC -------------------....(((((((.((((((.....(((.....))).((....)).)))))).((((((((.....)))))))).........)))))))......... ( -37.50) >DroVir_CAF1 6702 113 + 1 -AGUUUUCUUUGUG--CAGGAGAAUUUGGUGGAGCGCAAACAUCAUCGUUUGGCACGUUCGGAGCGCUCUGGCAUUUCGGAUCGGGAAGCCAAACCGACAACUAUGUACGUAUUUA -..........(((--((..((...((((((((((((((((......))))....(....)..)))))))(((.(..((...))..).)))..)))))...)).)))))....... ( -30.90) >DroPse_CAF1 6408 106 + 1 UCU---UC-UUUUGCUCAGGAAAAUCUGGUUGAACGGAAGCACCAUCGAUUGGCCCGCUCGGAGCGUUCUGGCAUCUCGGAUCGGGACGCCAAGCCUACAGCCAGGUAUU------ ..(---((-((......))))).(((((((((...((.....)).......(((.(((.....)))...((((.(((((...))))).)))).)))..)))))))))...------ ( -32.90) >DroEre_CAF1 7654 111 + 1 UAA---UCACAUUG--CAGGAAAACCUGGUCGAGCGGAAGCACCAUCGAUUGGCCCGUUCGGAGCGCUCAGGCAUCUCGGAUAGAGAUGCCAAGCCGACAGCCAGGUAAGCCUGUG ...---.......(--((((...(((((((.((((((.....(((.....))).))))))(..(.(((..((((((((.....)))))))).))))..).)))))))...))))). ( -48.90) >DroYak_CAF1 24411 111 + 1 UAA---UUAUAUUG--CAGGAAAACCUGGUCGAGCGGAAGCACCAUCGAUUGGCCCGUUCGGAGCGUUCAGGCAUCUCGGAUAGAGAUGCCAAGCCCACAGCCAGGUAUUCCUCAC ...---......((--.(((((.(((((((.((((((.....(((.....))).))))))((.((.....((((((((.....))))))))..))))...))))))).))))))). ( -47.80) >DroPer_CAF1 6375 106 + 1 UCC---UU-UUUUGCUCAGGAAAAUCUGGUUGAACGGAAGCACCAUCGAUUGGCCCGCUCGGAGCGUUCUGGCAUCUCGGAUCGGGACGCCAAGCCUACAGCCAGGUAUU------ (((---(.-........))))..(((((((((...((.....)).......(((.(((.....)))...((((.(((((...))))).)))).)))..)))))))))...------ ( -33.60) >consensus UAA___UC_UUUUG__CAGGAAAAUCUGGUCGAGCGGAAGCACCAUCGAUUGGCCCGUUCGGAGCGUUCAGGCAUCUCGGAUAGAGAUGCCAAGCCGACAGCCAGGUAUUCCU___ .......................(((((((.(((((......(((.....))).((....))..))))).(((.((((.....)))).))).........)))))))......... (-28.20 = -27.07 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:40 2006