Locus 6061

Sequence ID 2R_DroMel_CAF1
Location 19,068,020 – 19,068,120
Length 100
Max. P 0.638326
window9713

overview

Window 3

Location 19,068,020 – 19,068,120
Length 100
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 87.46
Mean single sequence MFE -28.40
Consensus MFE -20.09
Energy contribution -20.15
Covariance contribution 0.06
Combinations/Pair 1.20
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value 0.22
SVM RNA-class probability 0.638326
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19068020 100 - 20766785
CCACAACAGCUGUCCACAACAGAAAACAGCUGUUCGAACGGCGA--CACGGCGAAGUACAGUGGGCGCUGGCUAAGACGUAAGCUGAACAAAGAAAUCGACA
.....((((((((............))))))))((((.((.((.--..)).))..((.((((..(((((.....)).)))..)))).)).......)))).. ( -27.20)
>DroSec_CAF1 10534 100 - 1
CCACAACAGCUGUCCACAACAGAAAACAGCUGUUCAGACGGCGA--CGCGGCGAAGUACAGUGGGUGCUGACUAAGACGUACGCUGAACAAAGAAAUCGCCA
........((((((...(((((.......)))))..))))))..--...(((((.((.(((((..((((.....)).))..))))).)).......))))). ( -29.20)
>DroSim_CAF1 10417 100 - 1
CCACAACAGCUGUCCACAACAGAAAACAGCUGUUCAGACGGCGA--CGCGGCGAAGUACAGUGGGCGCUGACUAAGACGUACGCUGAACAAAGAAAUCGCCA
........((((((...(((((.......)))))..))))))..--...(((((.((.(((((..((((.....)).))..))))).)).......))))). ( -31.60)
>DroYak_CAF1 23297 102 - 1
CAACAACAGCUGUCCACAACAGAAAACAGCUGAUUUGAUGGUGAAUCGCGGCGAAGUACAGUGGGCGCCCGCUUAGACGUAAGUUGCAUUAAGAAAACCCAA
......(((((((............)))))))....(((.....)))(((((...((..(((((....)))))...))....)))))............... ( -25.60)
>consensus
CCACAACAGCUGUCCACAACAGAAAACAGCUGUUCAGACGGCGA__CGCGGCGAAGUACAGUGGGCGCUGACUAAGACGUAAGCUGAACAAAGAAAUCGCCA
....(((((((((............)))))))))....((.((.....)).))..((.(((((.(((((.....)).))).))))).))............. (-20.09 = -20.15 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:39 2006