Locus 6060

Sequence ID 2R_DroMel_CAF1
Location 19,067,071 – 19,067,173
Length 102
Max. P 0.813144
window9712

overview

Window 2

Location 19,067,071 – 19,067,173
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.43
Mean single sequence MFE -41.00
Consensus MFE -28.91
Energy contribution -29.85
Covariance contribution 0.94
Combinations/Pair 1.22
Mean z-score -1.82
Structure conservation index 0.71
SVM decision value 0.65
SVM RNA-class probability 0.813144
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19067071 102 - 20766785
UC------------------GCUCUUCGACUGGAGUCCUCCAAGGGGUACUCCUUAGCCAGAGUGUUAGUCUGGUCGUAGAGCUUUAUGGGCACCAGUUCGGAACCGUGGGUGGCCUGCA
..------------------(((((.((((.((((((((.....))).))))).....((((.......)))))))).))))).....((.((((....((....))..)))).)).... ( -40.50)
>DroSec_CAF1 9570 102 - 1
UU------------------GCACUAUGACUGGAGUCCGCCAAGGGGUACUCCUUAGCCAAGGUGUUAUUCUGGUCAUAGAGCUUGAUGGGCACCAGGUGGGAACCGUGGGUGGCUUGCA
..------------------((.(((((((..((((.((((...((.((.....)).))..))))..))))..))))))).)).((..((.((((.(((....)))...)))).))..)) ( -39.90)
>DroSim_CAF1 9465 102 - 1
UU------------------GCACUAUGACUGGAGUCCGCCAAGGGGUACUCCUUGGCCAGGGUGUUAUUCUGGUCAUAGAGCUUGAUGGGCACCAGGUGGGAACCGUGGGUGGCUUGCA
..------------------((.(((((((..((((((((((((((....))))))))...))....))))..))))))).)).((..((.((((.(((....)))...)))).))..)) ( -44.80)
>DroYak_CAF1 22268 120 - 1
UCUCAGAAGAUACGAUCUCUUCACUGUGACUAGCGUCCUCCAAGGGGUACUCCAUAGCCAGGGUAUUAUCCUGGUCGUACAGCUUGAUGGGCAGCAGAUGGGCACCAUGGCUGGCCUGCA
.....(((((.......)))))............((((..((((..((((......((((((((...)))))))).))))..))))..)))).((((.(.(((......))).).)))). ( -38.80)
>consensus
UC__________________GCACUAUGACUGGAGUCCGCCAAGGGGUACUCCUUAGCCAGGGUGUUAUUCUGGUCAUAGAGCUUGAUGGGCACCAGGUGGGAACCGUGGGUGGCCUGCA
.......................(((((((((((((.((((...((.((.....)).))..))))..))))))))))))).((.....((.((((.(((....)))...)))).)).)). (-28.91 = -29.85 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:38 2006