Locus 606

Sequence ID 2R_DroMel_CAF1
Location 3,091,365 – 3,091,463
Length 98
Max. P 0.802973
window1095

overview

Window 5

Location 3,091,365 – 3,091,463
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.00
Mean single sequence MFE -25.27
Consensus MFE -17.23
Energy contribution -19.15
Covariance contribution 1.92
Combinations/Pair 1.35
Mean z-score -1.92
Structure conservation index 0.68
SVM decision value 0.62
SVM RNA-class probability 0.802973
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3091365 98 - 20766785
-AUUUCAAACUGAUGAACCACAUAGAUGAGGUCUUACCAUCACUAGACCCUUGCUGCUGCGGGCCAAUCCUUCGUGGAAGUUCUUCGGUUUGUUUUGAA
-....((((((((.((((..(((..(.(((((((..........)))))(((((....)))))....)).)..)))...)))).))))))))....... ( -26.50)
>DroSec_CAF1 6159 98 - 1
-AUUUCAAACUGAAGAACCAUAUAGAUAAGGUCUUACCAUCACUAGGCCCUUGCUGCUGCGGGCCAAUCCUUCGUGGAAGUUCUUCGGUUUGUUUUGAA
-....(((((((((((((......(((..((.....)))))....(((((..((....)))))))..(((.....))).)))))))))))))....... ( -33.80)
>DroSim_CAF1 11662 98 - 1
-AUUUCAAACUGAAGAACCAUAUAGAUAAGGUCUUACCAUCACUAGGCCCUUGCUGCUGCGGGCCAAUCCUUCGUGGAAGUUCUUUGGUUUGUUUUGAA
-....(((((..((((((......(((..((.....)))))....(((((..((....)))))))..(((.....))).))))))..)))))....... ( -31.40)
>DroEre_CAF1 6175 88 - 1
-AUUUAAGUAUGAGGAACCCUA----------CUUACCAUUACUAGGCCCUUGCUGCUGCGGGCCAAUCCUUCGUGGAAGUUCUUCGGUUUGUUUUGAA
-.........((((((((....----------.............(((((..((....)))))))..(((.....))).))))))))............ ( -23.90)
>DroYak_CAF1 6139 88 - 1
-AUUCAAAUUUGAGGAGUCCUA----------CUUACCAUCACUAAGCCCUUACUGCUGCGGGCCAAUCCUUCGUGGAAGUUCUUCGGUUUGUUUUGAA
-.((((((.(((((((.....(----------(((.((((......((((..........)))).........))))))))))))))).....)))))) ( -17.76)
>DroAna_CAF1 6082 97 - 1
AAUUAUAAAA-AAUAGCUCGUAAAAGUA-AUUCUUACCAUCACCAAACCCUUGCUGCUGCGAGCCAAUCCCUCAUGGAAGUUCUUGGGUUUAUUAUGAA
..((((((..-....(((((((..((((-(....................)))))..)))))))....(((....((.....)).)))....)))))). ( -18.25)
>consensus
_AUUUCAAACUGAAGAACCAUAUAGAUA_GGUCUUACCAUCACUAGGCCCUUGCUGCUGCGGGCCAAUCCUUCGUGGAAGUUCUUCGGUUUGUUUUGAA
.....(((((((((((((...........................(((((..((....)))))))..(((.....))).)))))))))))))....... (-17.23 = -19.15 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:42 2006