Locus 6056

Sequence ID 2R_DroMel_CAF1
Location 19,060,707 – 19,060,814
Length 107
Max. P 0.843723
window9704

overview

Window 4

Location 19,060,707 – 19,060,814
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -36.68
Consensus MFE -33.81
Energy contribution -32.82
Covariance contribution -0.99
Combinations/Pair 1.38
Mean z-score -1.58
Structure conservation index 0.92
SVM decision value 0.76
SVM RNA-class probability 0.843723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19060707 107 - 20766785
UGUUGAAAGUUCUUCUUCGAAGGGAGAUCUCUUCCUAGCCAGCCUUAUUGCCGUUCGGCUUGUCGCCGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUGAGGCACGGU
..(((((........)))))((((((....)))))).(((.(((((((..(((((((((.....))))).((((.....))))......))))..)))))))..))) ( -41.40)
>DroSec_CAF1 3282 104 - 1
UGUUGAAAAUUC---UUCAAAAUGAGAUCUCUUCCUAGCCAGCCUUAUUCCCGUUCGGCUUGUCGCCGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUAAGGCACGGU
..(((((.....---))))).................(((.(((((((..(((((((((.....))))).((((.....))))......))))..)))))))..))) ( -35.00)
>DroSim_CAF1 3137 107 - 1
UGUUGAAACUUCUUCUUCGAAGGGAGAUCUCUUCCUAGCCAGCCUUAUUCCCGUUCGGCUUGUCGCCGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUGAGGCACGGU
..(((((........)))))((((((....)))))).(((.(((((((..(((((((((.....))))).((((.....))))......))))..)))))))..))) ( -42.10)
>DroEre_CAF1 3076 101 - 1
UGUUAAAAC------UUUAAAAGGAGAUCGCUUUUUAGCCAGCCUUAUUGCCGUUCGGUUUGUCGCCGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUGAGGCACGGU
.........------..(((((((......)))))))(((.(((((((..(((((((((.....))))).((((.....))))......))))..)))))))..))) ( -33.60)
>DroYak_CAF1 3406 101 - 1
UGUUAAAAC------UUCGAAAGGAGAUCGCUUUUUAGCCAGCCUUAUUGCCGUUCGGUUUCUCGCCGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUGAGGCACGGU
........(------(((....))))((((((....)))..(((((((..(((((((((.....))))).((((.....))))......))))..)))))))..))) ( -37.10)
>DroAna_CAF1 3110 103 - 1
UCUUUGAACUUAG-CCUAGAAAAGAGAUCGUU---UAGCCAGCCUUGUUGCCAUUCGGUUUGUCACUGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUGAGGCACGGU
(((((...((...-...)).))))).(((((.---..(((.(((((..(((..((((((.....))))))((((.....))))....)))..)))))..)))))))) ( -30.90)
>consensus
UGUUGAAACUUC___UUCGAAAGGAGAUCGCUUCCUAGCCAGCCUUAUUGCCGUUCGGCUUGUCGCCGAAGCGCAGUAUGCGCGUCAGCAUGGAGGUGAGGCACGGU
..(((((........)))))((((((....)))))).(((.(((((((..(((((((((.....))))))((((.....)))).......)))..)))))))..))) (-33.81 = -32.82 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:27 2006