Locus 6053

Sequence ID 2R_DroMel_CAF1
Location 19,050,657 – 19,050,760
Length 103
Max. P 0.587032
window9699

overview

Window 9

Location 19,050,657 – 19,050,760
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.35
Mean single sequence MFE -21.97
Consensus MFE -15.21
Energy contribution -14.30
Covariance contribution -0.91
Combinations/Pair 1.41
Mean z-score -1.20
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.587032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19050657 103 + 20766785
CUAGCGAUCUUCUUCAACAUCUGGACCCACAAAUUCGUUGUAUAUAGAUCGAUCCUGAGCAUCAACAGCUACGUGAUGCCCAAUAUCAUAAGUAGCAUAUCCU
...(((((((....((((((.((......)).))..)))).....)))))(((..((.((((((.(......))))))).))..))).......))....... ( -21.40)
>DroPse_CAF1 4671 103 + 1
UCGGCGUUUGCCAUCGAUAUUUGUAGCCAAAGAUUUGUUGUCUACAAGGCAAUUCUCAGCAUCCACAGCUUUGUUAUGCCCAACAUCAUCAGUAGCCUCUCCU
..(((....)))...(((..((((((.(((.......))).))))))((((...(..(((.......)))..)...))))....)))................ ( -19.40)
>DroSim_CAF1 1959 103 + 1
CUAGCGAUCUUCUUCAACAUCUGGACCCAGAACUGCGUUGUAUAUAGGUCGAUCCUGAGCAUCAACAGCUACGUGAUGCCCAAUAUCAUAAGUAGCAUAUCCU
...(((((((....((((.((((....)))).....)))).....)))))(((..((.((((((.(......))))))).))..))).......))....... ( -24.80)
>DroEre_CAF1 1865 103 + 1
UUAGCGAUUUUCUUUAAUAUCUGGACCCAGAAAUACGUUGUAUACGGAUCGAUUUUGAGCAUUAAUAGCUAUGUGAUGCCCAAUAUCAUAAGCAGCAUAUCCU
...((((((..........((((....))))....(((.....)))))))(((.(((.((((((.((....)))))))).))).)))....)).......... ( -20.60)
>DroYak_CAF1 1836 103 + 1
CUAGCGAUUUUCUUUAAUAUCUGGACCCAGAAAUGCCUUGUAUACAGAUCGAUCUUGAGCAUCAACAGCUAUGUGAUGCCCAAUAUCAUAAGCAGCAUAUCCU
...(((((((.........((((....)))).((((...))))..)))))(((.(((.((((((.((....)))))))).))).)))....)).......... ( -22.80)
>DroPer_CAF1 4346 103 + 1
UCGGCGUUUGCCAUCGAUAUUUGUAGCCAAAGAUUUGUUGUCUACAAGGCAAUUCUCAGCAUCCACAGCUUUGUGAUGCCCAACAUCAUCAGUAGCCUCUCCU
..(((..(((((........((((((.(((.......))).)))))))))))......(((((.((......)))))))...............)))...... ( -22.80)
>consensus
CUAGCGAUUUUCUUCAAUAUCUGGACCCAGAAAUUCGUUGUAUACAGAUCGAUCCUGAGCAUCAACAGCUAUGUGAUGCCCAAUAUCAUAAGUAGCAUAUCCU
...(((((((....((((.((((....)))).....)))).....)))))(((..((.(((((.((......))))))).))..))).......))....... (-15.21 = -14.30 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:22 2006