| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,050,425 – 19,050,537 |
| Length | 112 |
| Max. P | 0.517038 |
| Location | 19,050,425 – 19,050,537 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -34.53 |
| Consensus MFE | -22.43 |
| Energy contribution | -22.02 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19050425 112 - 20766785 CCAGUUCCUGCACUGCCAGGUGAGGAGCAUGAUGGAAAAUAUGUGAACUACAUAGAUGGCGGACUCGAUAGCAUUUAGGUAGCGGUCCAAGGAUACCCUCUGUGUGGUGACG (((((((((.((((....))))))))))....))).......((..((((((((((....((((.((.((.(.....).)).))))))..((....)))))))))))).)). ( -36.70) >DroSec_CAF1 2028 112 - 1 CCAGUUCCUGCACUGCCAAGUGAGGAGCAUGAUGGAAAAUAUGUGAACUACAUAGAUGGCGGACUCGAUGGCAUAUAGAUAGCGGUCCAAGGACACCCUCUGUGUGGUGACG (((((((((.((((....))))))))))....))).......((..((((((((((.((.(..((.(((.((.........)).)))..))..).)).)))))))))).)). ( -39.80) >DroSim_CAF1 1727 112 - 1 CCAGUUCCUGCACUGCCAAGUGAGGAGCAUGAUGGAAAGUAUGUGAACUACAUAGAUUGCGGACUCGAUGGCAUAUAGAUAGCGGUCCAAGGACACCCUCUGUGUGGUGACG (((((((((.((((....))))))))))....))).......((..((((((((((....((((.((....(.....)....))))))..((....)))))))))))).)). ( -36.00) >DroEre_CAF1 1633 112 - 1 CGCGUUUCUACACUGCCAAGUGAGGAGCAUAAUGAAAGAUAUGUGCACUACAUAGAUUGCAGACUCAAAGGUAUUUAGAUAGCGGUCCAAGGAUACCCUCUGUGUGGUGAUG ...((((((.((((....)))))))))).................((((((((((((((......))).(((((((.(((....)))...))))))).)))))))))))... ( -31.10) >DroYak_CAF1 1604 112 - 1 CCAGUUUCCACACUGCCAAGUGAGGAGCAUUAUGGAAAAUAUGUGAACCACAUAGAUGGCAGACUCAGUGGCACUUAGGUAGCGGUCCAAGGAUAACCUCUGUGUGGUGAUG (((..((((.((((....)))).)))).....)))...........((((((((((.((.....((..(((.(((........))))))..))...)))))))))))).... ( -32.90) >DroAna_CAF1 56 112 - 1 UCUGUUUCUCCAUUGCAGUGUCAGAAGUAAUAUAGAAGCGAUAUGGAUCACAUAGAUCGCGGAUUCUACGGCGUUCAAAUAGCGAUCGAGGGAAACUUUUUGGAGGGUGAUC ..(((((((..(((((..........)))))..))))))).....((((((...((((((((((.(....).)))).....))))))((((....)))).......)))))) ( -30.70) >consensus CCAGUUCCUGCACUGCCAAGUGAGGAGCAUGAUGGAAAAUAUGUGAACUACAUAGAUGGCGGACUCGAUGGCAUUUAGAUAGCGGUCCAAGGAUACCCUCUGUGUGGUGACG ...((((((.((((....))))))))))..................((((((((((..............((.........)).(((....)))....)))))))))).... (-22.43 = -22.02 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:20 2006