Locus 6051

Sequence ID 2R_DroMel_CAF1
Location 19,046,733 – 19,046,853
Length 120
Max. P 0.531863
window9697

overview

Window 7

Location 19,046,733 – 19,046,853
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -42.17
Consensus MFE -24.17
Energy contribution -24.53
Covariance contribution 0.37
Combinations/Pair 1.23
Mean z-score -2.36
Structure conservation index 0.57
SVM decision value -0.00
SVM RNA-class probability 0.531863
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19046733 120 - 20766785
CUUCUUCUACCCGUACGUGGAUGGGCCCAGCUGCAAUCCAGCCGGAUUCGAGUGCCUGCUGGACUUCAAAUGGCCCAUCUGGGCGCUGCACAUCUGCAAGUGCCCGUCCACCUGCACCGA
............(((.(((((((((((.(..((...((((((.((((....)).)).))))))...))..))))))....((((((((((....))).))))))))))))).)))..... ( -50.30)
>DroVir_CAF1 468 120 - 1
CUUCUUCUAUCCGUUUGUGGAGGGACCCAGCUGCAAUCCGGCGGGCUUUGAGUGCCUGCUGGAUUUUAAGUGGCCCAUCUGGGCGCUGCACAUUUGCAAGUGUCCAUCGACCUGCACGGA
.........(((((..(..(.(((.((..(((..((((((((((((.......))))))))))))...))))))))...(((((((((((....))).)))))))).....)..)))))) ( -53.00)
>DroGri_CAF1 6364 120 - 1
CUUCUUCUAUCCGUUUGUGCCUGGGCCCAGCUGUAAUCCGGCUGGCUUCGAAUGCCUGCUAGAUUUUAAAUGGCCCAUUUGGGCGUUACACAUUUGCAAGUGCCCCUCAACCUGCACCGA
................((((.((((((.......((((..((.(((.......))).))..))))......))))))...(((((((.((....)).)).)))))........))))... ( -35.02)
>DroWil_CAF1 501 120 - 1
CUUCUUCUAUCCAUUUGUGCCCGGCCCUAGCUGUAAUCCGGCUGGAUUUGAAUGCCUCUUGGACUUCAAGUGGCCCAUUUGGGCUCUUCACAUAUGCAAGUGUCCAUCGACGUGCACCGA
................((((.((((((((((((.....)))))))(((((((..((....))..)))))))))))....(((((.(((((....)).))).))))).....).))))... ( -37.00)
>DroMoj_CAF1 471 120 - 1
CUUCUUCUAUCCCUUUGUCGAGGGACCAACUUGUAAUCCAGCUGGAUUUGAAUGUCUUUUGGACUUUAAGUGGCCCAUUUGGGCGUUGCACAUUUGCAAAUGUCCCUCGACUUGCACUGA
................((((((((((..(((((...(((((..((((......)))).)))))...))))).((((....)))).(((((....)))))..))))))))))......... ( -42.10)
>DroAna_CAF1 509 120 - 1
CUUUUUCUAUCCCUAUGUGGAAGGACCUAGCUGUAAUCCGGCUGGAUUCGAGUGCCUGCUGGACUUCAAGUGGCCCAUCUGGGCGCUACACAUCUGCAAGUGCCCCUCCACCUGUACAGA
................(((((.((..(((((((.....)))))))......(..(.(((.(((.....((((.(((....))))))).....)))))).)..))).)))))......... ( -35.60)
>consensus
CUUCUUCUAUCCGUUUGUGGAGGGACCCAGCUGUAAUCCGGCUGGAUUCGAAUGCCUGCUGGACUUCAAGUGGCCCAUCUGGGCGCUGCACAUUUGCAAGUGCCCCUCGACCUGCACCGA
................((.((.((((...((((((.((((((.((.........)).)))))).........((((....))))..........))).))))))).)).))......... (-24.17 = -24.53 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:19 2006