Locus 6050

Sequence ID 2R_DroMel_CAF1
Location 19,034,241 – 19,034,333
Length 92
Max. P 0.671484
window9696

overview

Window 6

Location 19,034,241 – 19,034,333
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 79.48
Mean single sequence MFE -29.53
Consensus MFE -20.44
Energy contribution -19.88
Covariance contribution -0.55
Combinations/Pair 1.29
Mean z-score -1.34
Structure conservation index 0.69
SVM decision value 0.29
SVM RNA-class probability 0.671484
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19034241 92 - 20766785
--AUGUAUAGAUAAAUAGAGGCUCACCUUUCGCUGGUUAUCAGUCAUACUGCUAUUCGGUGUGGCGCUCAUCUCCGAGUGCGCUCUGUGCAGUU
--.((((((((.....(((((....)))))(((((..((.(((.....))).))..)))))..((((((......))))))..))))))))... ( -29.20)
>DroPse_CAF1 136789 90 - 1
AA----CUGCCUUCAAUGAAACCCACCUUGCGCUGGUUAUCCGUCAUGCUGCUGUUGGGCGUGGCACUCAUAUCGGAGUGCGCCCGUGGCAGUU
((----(((((....((((.....(((.......)))......)))).........((((...((((((......))))))))))..))))))) ( -31.10)
>DroSec_CAF1 132145 92 - 1
--AUGUAUGGAUUAAGUGGGACUCACCUUUCGCUGGUUAUCAGUCAUACUGCUAUUCGGUGUGGCGCUCAUCUCCGAGUGCGCUCUGUGCAGUU
--.((((((((...((((..(......)..))))..........(((((((.....)))))))((((((......))))))..))))))))... ( -27.90)
>DroEre_CAF1 139856 91 - 1
--AAAUAUAUAUAGUUAG-GGCUCACCUUUCGCUGGUUGUCAGUCAUACUGCUAUUCGGCGUGGCGCUCAUCUCCGAGUGCGCUCGGUGCAGUU
--................-((((((((...(((((..((.(((.....))).))..)))))..((((((......))))))....)))).)))) ( -28.00)
>DroYak_CAF1 136951 92 - 1
--AAAUAUACAUAAAUAGGGGCUCACCUUUCGCUGGUUAUCAGUCAUGCUGCUAUUCGGCGUGGCGCUCAUCUCCGAGUGCGCUCGGUGCAGCU
--.................((((((((...(((((..((.(((.....))).))..)))))..((((((......))))))....)))).)))) ( -31.10)
>DroPer_CAF1 137438 90 - 1
UA----CUGCCUUCAAUGAAACCCACCUUGCGCUGGUUAUCCGUCAUGCUGCUGUUGGGCGUGGCACUCAUAUCGGAGUGCGCUCGUGGCAGUU
.(----(((((..........((((.(..(((((((....)))....)).)).).))))((.(((((((......)))))).).)).)))))). ( -29.90)
>consensus
__A__UAUACAUAAAUAGAGACUCACCUUUCGCUGGUUAUCAGUCAUACUGCUAUUCGGCGUGGCGCUCAUCUCCGAGUGCGCUCGGUGCAGUU
...................((((.(((.......)))....))))..(((((.....(((...((((((......)))))))))....))))). (-20.44 = -19.88 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:18 2006