Locus 605

Sequence ID 2R_DroMel_CAF1
Location 3,089,247 – 3,089,365
Length 118
Max. P 0.827632
window1094

overview

Window 4

Location 3,089,247 – 3,089,365
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 73.22
Mean single sequence MFE -44.60
Consensus MFE -19.32
Energy contribution -18.52
Covariance contribution -0.80
Combinations/Pair 1.42
Mean z-score -2.02
Structure conservation index 0.43
SVM decision value 0.70
SVM RNA-class probability 0.827632
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3089247 118 - 20766785
CCACCAAAUUGUUCUUUGUGUCGUUUCUCGGCCAGAGAGGUUCCAUCUCAUUUGGCUCGAGAUGGAGCCAUGGAUCGGCUGGACGACUCUGCUCCUGCAGUUCUAUAUCAAAGUGACA
.........(((((((((.((((((...(((((.((..(((((((((((.........))))))))))).....))))))))))))).((((....))))........))))).)))) ( -43.00)
>DroPse_CAF1 4370 118 - 1
CCACGAGAUUGUGCUUGUGGUCGUUUUUCGGCCACAAAGGCUCAAACUGAUUAGGUUGAAGGGCCAUCCACGGAUCGCCCGGACGACUCUGCUCCUGGAGCUCGAUUUUGUAGGGGCA
(((((((((((...(((((((((.....))))))))).(((((.....((.(((((((..((((.(((....))).))))...)))).))).))...)))))))))))))).)).... ( -47.30)
>DroGri_CAF1 4082 118 - 1
CGAUCAGUUUGUGUGCGGAAUCGUUUUUGGGCCAGAGUGGUUGGUACUCCUGCGGCUCGAGUGCUAGCCAGUGAUCACCAGGACGAUUCUGCUCCUGCAGUUCGAUCUUGAAGUUACA
.((((...(((((.(((((((((((((.((.....(.((((((((((((.........)))))))))))).).....)))))))))))))))...)))))...))))........... ( -44.50)
>DroEre_CAF1 4097 118 - 1
CCACUAAGUUGUUUUUGGCGUCGUUCCUCGGCCAGAGAGGUUCCAUCUGAUUCGGCUCGAGGUGGAGCCAUGGGUCGCCUGGACGGCUCUGCUCCUGCAGCUCUAUGUCAAAGUGACA
.......((..((((.((((((((((..(((((.....((((((((((((......)).))))))))))...)))))...))))))).((((....))))......)))))))..)). ( -45.80)
>DroAna_CAF1 4055 118 - 1
CCACCAGAUUGUUUUUAGAGUCGUUUUUCGGCCAAAGCGGCUCAAACUGGCCAGGUUGUAGAUCCAGCCAAGGAUCGCCGGGCCGGCUUUGUUCCUGCAACUCUACCUUGAAGCGGCA
...................((((((((..((.....((((..((((((((((.(((....(((((......)))))))).)))))).))))...)))).......))..)))))))). ( -39.70)
>DroPer_CAF1 4141 118 - 1
CCACGAGAUUGUGCUUGUGGUCGUUUUUCGGCCACAAAGGCUCAAACUGAUUAGGUUGAAGGGCCAUCCACGGAUCGCCCGGACGACUCUGCUCCUGGAGCUCGAUUUUGUAGGGGCA
(((((((((((...(((((((((.....))))))))).(((((.....((.(((((((..((((.(((....))).))))...)))).))).))...)))))))))))))).)).... ( -47.30)
>consensus
CCACCAGAUUGUGCUUGGAGUCGUUUUUCGGCCAGAGAGGCUCAAACUGAUUAGGCUCGAGGGCCAGCCACGGAUCGCCCGGACGACUCUGCUCCUGCAGCUCGAUCUUGAAGUGACA
.........((((......(((((((...((((.....))))...........(((((......)))))...........))))))).((((....))))..............)))) (-19.32 = -18.52 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:41 2006